Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8056 147 5e-30 seq48539 143 6e-29 seq8521 143 6e-29 seq15643 134 3e-26 seq4062 109 1e-18 seq9298 87.8 4e-12 >seq8056 Length=34938 Score = 147 bits (162), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || |||| || ||||| || ||||||||||||||||| |||||| Sbjct 32093 TCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAG 32034 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| |||||| || ||||||||||| || || |||||||| || || ||| Sbjct 32033 ATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTT 31974 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||||||||| ||||||| ||| || ||| Sbjct 31973 TCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACG 31914 Query 288463 AATATCTGCATTAT 288476 || |||||||| || Sbjct 31913 AAAATCTGCATGAT 31900 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | | ||| ||||||| || |||||| || || || ||||||| | Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | || || || ||||| |||| | ||| ||| |||||| Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGA---TCTGGG 32241 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| || ||||| || || |||||||| |||| ||| | ||| Sbjct 32240 GGGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCG 32181 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || | ||||||||||| |||||||| Sbjct 32180 ACCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 >seq48539 Length=7100 Score = 143 bits (158), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | |||| || ||||||||||||||| ||||||| Sbjct 6714 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGA 6655 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| || || || || |||||||||||||||| | ||| ||| ||||| Sbjct 6654 AAGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGA---TCTGG 6598 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||| || || ||||| || ||||| || ||||| || | || | || Sbjct 6597 AGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTC 6538 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 6537 AACTTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 Score = 131 bits (144), Expect = 4e-25 Identities = 175/241 (73%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || || | || | ||| ||| ||||||||||| || | Sbjct 6489 CATG-CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAAT 6431 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || || |||||||| || || || || ||||| ||||| | ||| ||| | Sbjct 6430 CGGAGAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGA---T 6374 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| ||| |||||||| || || ||||| || ||||||||||| || | |||| | Sbjct 6373 CTGGAGGGATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAG 6314 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 || || || | || |||||||| || |||| || || ||||| |||||||| ||| Sbjct 6313 GCTCCACCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTTGT 6254 Query 288479 T 288479 | Sbjct 6253 T 6253 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| | ||| || || || ||||||| | ||| ||| |||||| || ||| Sbjct 7100 CCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGA---TCTGGGGGAATACCT 7044 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || || ||||| || ||||| || ||||| || | ||| | || || ||||| Sbjct 7043 TCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGT 6984 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||||||||||||||| || |||||| Sbjct 6983 GTTATGGTTTTACCAGTCAGAGTCTTGACGAAGATTTGCATT 6942 >seq8521 Length=40141 Score = 143 bits (158), Expect = 6e-29 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || ||||||| || || ||||| ||||| ||||| |||||||| ||| Sbjct 2893 TCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAG 2834 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| || ||||| ||||||||||| || |||||||| Sbjct 2833 ATCAACCTCTGCTGA---TCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCTTTCACA 2777 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || || ||||| |||||||||||||| || ||| Sbjct 2776 TTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTG 2717 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 2716 ACAAAGATCTGCAT 2703 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| |||||||| | || ||||| ||||| || ||||| | Sbjct 2701 CCACCACGCAGACGAAGGACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAA 2642 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | || ||||| |||||||||| | ||| ||| |||||| Sbjct 2641 AGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGA---TCTGGG 2585 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || ||||| || || || || || ||||| | ||| | || Sbjct 2584 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCTATGGTGTCGGAGGGCTCA 2525 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||||||||||||||| |||||||| Sbjct 2524 ACCTCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGACGAAGATCTGCAT 2475 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| ||| || || || || |||||||| | | Sbjct 2245 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 2186 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | || ||||| |||||||||| | ||| ||| |||||| Sbjct 2185 AGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGA---TCTGGG 2129 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || |||||||| || || || | || | || Sbjct 2128 GGGATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCA 2069 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 2068 ACCTCTAGGGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | ||| || || ||||| || ||||||| | Sbjct 2473 CCACCACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2414 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || ||||| || ||||||| | ||| ||| |||||| Sbjct 2413 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGA---TCTGGG 2357 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||||||||| || || || || || ||| || | ||| Sbjct 2356 GGGATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCA 2297 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||||| ||||||||| || |||||||| Sbjct 2296 ACCTCCAGTGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247 >seq15643 Length=27379 Score = 134 bits (148), Expect = 3e-26 Identities = 171/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||||| ||| || | |||| ||| || || |||||||| || || | Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || ||||| || || | |||||||| |||||||||| | ||| ||| ||||| Sbjct 12213 AGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGA---TCTGGA 12157 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||||||| || ||||| || ||||| || ||||| |||| || | ||| Sbjct 12156 GGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCT 12097 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| || ||||| || || ||||| ||||| ||||||||| || Sbjct 12096 ACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATTGTG 12043 >seq4062 Length=67394 Score = 109 bits (120), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || || || || || || | ||| || || ||||| || ||||| | Sbjct 48391 TCCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 48332 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || ||||| | || || || ||||||||||| | ||| || ||||| Sbjct 48331 AAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGG---TCTGG 48275 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| ||||| ||||| || || || || | ||| || | || | || Sbjct 48274 GGGGATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTC 48215 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| ||||| ||||| || || || ||||| ||||| |||||||| ||| Sbjct 48214 CACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 48160 >seq9298 Length=187188 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65512 TCCGGTAGCATTCGAGGGCGCGCTGAAGCTCAAAGAGATTTCGTATATTCATGCGGAAGG 65571 |||| | || | || || ||||||||||| |||||||||||||||||||| || |||| Sbjct 27509 TCCGATCGCGATGGAAGGTGCGCTGAAGCTGAAAGAGATTTCGTATATTCACGCAGAAGC 27568 Query 65572 TTTTCATGGTGGTGAGCTGAAGCATGGGCCTCTCGCTCTTATCGATGAGAAAACACCGGT 65631 || | | || |||||||| ||||| || || || || || |||| | | | ||||| Sbjct 27569 TTATGCGGCGGGCGAGCTGAAACATGGCCCGCTGGCGCTGATTGATGCGGATATGCCGGT 27628 Query 65632 CATCGT 65637 ||||| Sbjct 27629 GATCGT 27634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178614020759452