Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq742 140 4e-28 seq6691 116 4e-21 >seq742 Length=196864 Score = 140 bits (154), Expect = 4e-28 Identities = 887/1399 (63%), Gaps = 37/1399 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||| | || |||||| | || ||||| || || || |||||||||||| Sbjct 48534 TAGATGTTGGAAGTGAAGGGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAG 48475 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || || ||||||||||| | || || ||| | || || | | | || | Sbjct 48474 GCGGTAGGCATGGGTGCGAGAAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCT 48415 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTT-GTCTCCCCCTGCCACATATCAAACTGGAG 114120 || | ||| |||||| | | || | | || | | |||||| ||| | || || Sbjct 48414 TTCAAGGCAGCCCAGTTCCACAA-ATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAG 48356 Query 114121 GATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAA 114180 || |||| | | | || |||| | |||||||||| ||||| ||| |||| Sbjct 48355 AATCCCTTTGCTGACAGGACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAG 48296 Query 114181 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGC 114240 ||| | || || || || || ||| ||||| ||||||||| || | ||||| Sbjct 48295 CTCGCAACTTGCTTCCAGAGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAG 48236 Query 114241 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTG 114300 || ||| | || ||||| | | || || | ||| |||| || || ||||| Sbjct 48235 CTGGGCTTTTTCACTCTCAAAAGGCAATCTCATTAAGACAAAAGCATCTGCCAGGCCTTG 48176 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGAT 114359 | || | || || ||||| || | ||| || || ||| ||| ||| || || | Sbjct 48175 TATTCCAATACCGATGGGGCGGTGACGCATGTTCGATGTTCTAGCT-TCTGGTACAGGGT 48117 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT---GAT-TTCA 114415 |||| || ||||||| | || | |||||| |||||| ||| || ||| |||| Sbjct 48116 AAAAGTTAACGTCGATAATTTTGTTCAAATTTTTAGTGACAGTCTTGGTTACGATCTTCA 48057 Query 114416 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 ||||||| | || || | | || | || ||| || || | ||||| Sbjct 48056 ----GCTTTTCAAAGTCGAA--TAC----CTTATTATCTACAAACATATTGACAGCGATA 48007 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 || |||| ||| || |||| ||||| || |||||| || | ||||| || || Sbjct 48006 GAGGCCAAATTGCAGACAGCTACTTCATCTTTGGAAGTGTATTCAACTATTTCTGTGCAG 47947 Query 114536 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 114595 | || | |||||| || |||| || | ||| || |||| ||| ||||| ||| Sbjct 47946 AGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCC 47887 Query 114596 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 114655 ||||| |||||||| || || ||||| || ||| || | || || ||| |||| | | Sbjct 47886 TTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAA 47827 Query 114656 -TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 114714 || ||| || | | | || | || || || | ||||| |||||| || || Sbjct 47826 GTCTGCGCCTTGATCTTCTTC-TTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGC 47768 Query 114715 TTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 114773 ||||| ||||| ||| | ||| || |||| || || | | ||||| | |||| Sbjct 47767 CTCAAATTCTTCTCCCCAGCACTCGTGTAAGCCG-GGAGCATCGTGGGGGCACATGAGAC 47709 Query 114774 ACCATTGACCACCCTCCTCA--ACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG- 114830 ||| | || | | ||| |||||||||||||| || || |||||||| | ||| | Sbjct 47708 TCCAAT--CCTCGTTGCTCTCGACACGCTTCATGAACAGATCGGGGATCCACA-AGCCGT 47652 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 |||| | || || ||| |||| || | || ||| ||| || || || | Sbjct 47651 AGAATAAGTCACGTGCACGAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATT 47592 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---CTTACGACGAC 114947 | | || |||||||||||||| || | ||| | |||| | || | | | Sbjct 47591 CAAATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTC 47532 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 | |||||| |||||| | || ||| ||| | || || ||||| || | | |||| Sbjct 47531 CTCCCTGGTCTACATAGCGGGCCGTGTTATTGTACACACGCAGCATGGGGACCAACCCAT 47472 Query 115008 CAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTG 115065 || || || || ||| ||| || || || ||||||| || || | || Sbjct 47471 TGGAGACTCCGTTAGTACCCGCGATGTAGGA-AC-CCTTGGCTCGGATGCAGTGTACATG 47414 Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125 | || ||||| || || |||| || | | || |||| | | || || ||||||| Sbjct 47413 AAGGCCGATACCTCCAGCAGACTTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGAT 47354 Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGG 115185 ||| || || ||| | | | || | |||||||| |||| || || | || Sbjct 47353 CCCTTCAATACTATCATCGCTCATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGG 47294 Query 115186 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTAT 115244 || | ||| ||| || || || | ||||| |||| || | | |||| | Sbjct 47293 CGTGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAAGTATTTC-TCTGACAGAAGGT 47235 Query 115245 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 115304 ||| || || | | | | ||||||||||||||| ||||||| || |||| ||| | Sbjct 47234 TGTAAGTTTCAATGGCTGAATCAATGTCTTCCCCGTGGATACCGACAGATACCCTCATGA 47175 Query 115305 ACATGTATTGGGGTGTTTC 115323 ||||| ||| ||| |||| Sbjct 47174 GCATGTGTTGCGGTCTTTC 47156 >seq6691 Length=42033 Score = 116 bits (128), Expect = 4e-21 Identities = 347/522 (66%), Gaps = 14/522 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||||||| ||||||||||||||| ||||| || |||| | ||| | ||||| Sbjct 13924 GTATTCCCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCATGTCCAT 13983 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTG-TTGGCACC-CCAATCTGTTTGAGGAGA 125875 || || |||||||| || ||| | || ||||||| || | | | ||| Sbjct 13984 GAAGCTGAAGGGGTTCTTGGA--TCCGTAGTGCTTGGCACAGCCCAGGTCCACCAAGAGC 14041 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | || | ||||| |||| |||||| || ||||||| || | || | Sbjct 14042 CGGTCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTG 14101 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || ||||| || ||| | | ||||| || || ||| ||||| || Sbjct 14102 ACGGGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCT 14161 Query 125996 TGAA-TGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGA-GTTCCACGGCAAAC 126052 | | | ||| | | || | || | |||| || ||| | | || |||||| Sbjct 14162 AGGACTCGTG--CGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCA-GGCAAAG 14218 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||||||||||||||| |||||||| | || || |||| || || |||||| Sbjct 14219 TCGCAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATG 14278 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAA-TGAACCCGAGAAGAAGATTCCCT 126170 || || |||||||||| ||| || || | ||||| || || |||||||||||||| | Sbjct 14279 AGGCCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTG--CCGGAGAAGAAGATTCCTT 14336 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACT 126230 | || || ||||| || | | |||||| | |||| | || | || | | ||||| Sbjct 14337 CTACGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACT 14396 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 126272 || ||||| | ||||| |||| | |||||| | ||||| Sbjct 14397 GCAGGGCCCAGTCTGCCTTCTTCTTCACACACGGTAGGGTCT 14438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596839622028720