Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq223 129 6e-25 seq11224 98.7 1e-15 seq7028 96.9 4e-15 seq205 93.3 5e-14 seq68679 87.8 2e-12 seq28704 87.8 2e-12 seq1397 87.8 2e-12 seq7379 86.0 7e-12 seq3490 84.2 2e-11 seq44093 82.4 8e-11 seq18295 82.4 8e-11 seq14541 82.4 8e-11 seq1417 82.4 8e-11 >seq223 Length=511576 Score = 129 bits (142), Expect = 6e-25 Identities = 314/476 (66%), Gaps = 0/476 (0%) Strand=Plus/Minus Query 94975 GGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGACAAGGTGCCC 95034 || || |||||||| || ||||||||||| | ||| || ||| ||| || | || Sbjct 113973 GGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAAATCCCT 113914 Query 95035 ATTCCCAATCTGACGCATCTATTGTACGGTTTCATACCCATTTGCGGAGGCGACGGTATC 95094 | || ||||| ||| | |||||||| |||| || |||||||| || ||||| || Sbjct 113913 GCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATT 113854 Query 95095 AACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCATGTGCCGGC 95154 ||||||||| ||||| | ||| |||| |||| || ||| | ||||| || Sbjct 113853 AACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGG 113794 Query 95155 AGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAACCGCAAAAA 95214 | | ||||| || ||| || ||||| | | ||| | || | || || || Sbjct 113793 CGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAA 113734 Query 95215 GGTGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATGGCTATTCGC 95274 || || ||||| | |||||| || |||||||| ||||| ||||| | Sbjct 113733 GGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGAAA 113674 Query 95275 AAACATAATCCTCATTTGAAAATTTTGCCTAGCATCGGTGGTTGGACACTGAGCGACCCT 95334 ||| |||| | |||||||| | ||| ||||||||| ||||| || ||||| Sbjct 113673 AAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCG 113614 Query 95335 TTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACTCTGTTCGTGAATTC 95394 |||||||| | || | || || | || || || | ||| || |||||| Sbjct 113613 TTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAAAGAATTC 113554 Query 95395 TTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGTTTCCCGGCGG 95450 ||||| |||||||| || || || || || || |||||||| ||||| ||||| Sbjct 113553 CTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498 >seq11224 Length=41968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 15869 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 15928 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||||||||||| Sbjct 15929 TTACCACTATACTACCGAGGAT 15950 >seq7028 Length=60819 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 47122 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 47063 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 47062 TACTACCGAGGAT 47050 >seq205 Length=216154 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 118978 ATGCAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 118919 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||| ||||||||||||| Sbjct 118918 TACTTACCACCATACTACCGAGGA 118895 >seq68679 Length=32626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 5845 AAAAATTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5788 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 5787 TTACCACTATACTACTGAAGAT 5766 >seq28704 Length=14463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 4008 AAAAATTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4065 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 4066 TTACCACTATACTACTGAAGAT 4087 >seq1397 Length=119430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || |||||||||||| ||||||||||||||||||||| |||| Sbjct 7946 AAAAAATCTCTCCA--GCGGGAAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 7889 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 7888 TTACCACTATACTACTGAAGAT 7867 >seq7379 Length=79682 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 56972 CAGTTAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTG 57031 || ||| ||| ||| || |||| |||||| |||| | || | |||||||||| | Sbjct 41415 CAATTATCAAAAAACGAA--TTTA-GAAAAAAAATCTCTCCAGCGGGGAATCGAACCCCG 41471 Query 57032 GTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 41472 GTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACTGAAGAT 41519 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 19880 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 19823 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 19822 TTACCACTATACTACTGAAGAT 19801 >seq3490 Length=70237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 42762 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACTGAAGAT 42821 Query 57080 T 57080 | Sbjct 42822 T 42822 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 42989 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACTGAAGAT 43048 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 44534 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 44591 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 44592 TTACCACTATACTACTGAAGAT 44613 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||| Sbjct 50884 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACTGAAGAT 50825 >seq44093 Length=3230 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 1427 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1370 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 1369 TTACCACTATACTACTGAAGAT 1348 >seq18295 Length=21712 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 81 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 24 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 23 TTACCACTATACTACTGAAGAT 2 >seq14541 Length=24660 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 6681 AAAAACTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 6738 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 6739 TTACCACTATACTACTGAAGAT 6760 >seq1417 Length=110962 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| || | |||||||||| ||||||||||||||||||||| |||| Sbjct 65782 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 65725 Query 57058 TCACCACTATACTACCGAGGAT 57079 | ||||||||||||| || ||| Sbjct 65724 TTACCACTATACTACTGAAGAT 65703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542745406126560