Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq223 208 8e-49 seq8056 116 4e-21 seq8521 109 5e-19 seq48539 104 2e-17 seq15643 102 8e-17 seq4062 95.1 1e-14 >seq223 Length=511576 Score = 208 bits (230), Expect = 8e-49 Identities = 348/501 (69%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 27464 GTCGTCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGTAATTTTGCCGCGGACCGC 27523 ||||| | ||| || ||||| || ||||| ||||| || || || ||| ||| Sbjct 113979 GTCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAA 113920 Query 27524 GTACCGGCGCCCAACCTGTCACATTTACTATACGGGTTCGTGCCGATATGCGGCGGCGAC 27583 | || |||| |||||| ||||| | | ||||| ||| |||||| |||||||| ||| Sbjct 113919 ATCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGAC 113860 Query 27584 GGCATCAACGACAGCCTTAAAACTATTCCGGGTAGTTTCGAAGCGTTGCAAAAGTCGTGC 27643 || || |||||||| | |||| ||| ||| ||||| | || |||||| | || Sbjct 113859 GGGATTAACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGT 113800 Query 27644 GCGGGTCGTGAAAACTTTAAAGTGGCCATTCACGATCCGTGGGCTGCATTGCAAAAACCA 27703 ||||| ||| | | |||||||| || || |||||||| |||||||| |||| | || Sbjct 113799 GCGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCT 113740 Query 27704 CAAAAAGGCGTTTCGGCTTGGACGGAACAATACAAAGGTAATTTTGGACAGTTAATGGCG 27763 || ||||||| | | | | || || |||||||||||||| ||| | |||||| Sbjct 113739 CAGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCG 113680 Query 27764 ATAAAGCGTGCAAACCCGCATTTAAAAATTCTACCGTCCATAGGAGGGTGGACGCTGTCG 27823 | || || | || | | |||||| | || ||||| || || |||||| |||| Sbjct 113679 CTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCA 113620 Query 27824 GATCCATTTTACTTTTTTCACGACGCT---GGCAAA-CGCGCCACATTCGTCGAATCGGT 27879 || || || || ||||| || | ||| || || | | ||||| | ||||| Sbjct 113619 GACCCGTTCTA----TTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGT 113564 Query 27880 TCGCGAATTTCTGCAAACTTGGAAATTTTTCGACGGCGTGGACATCGATTGGGAATTTCC 27939 ||||| |||||||| ||||| || || ||||| ||||| || || ||||||||||| Sbjct 113563 AAAAGAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCC 113504 Query 27940 TGGCGGTAACGGCGCAAACCC 27960 |||||| ||| | |||||| Sbjct 113503 GGGCGGTGGCGGTGAAAACCC 113483 >seq8056 Length=34938 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | ||||| || || || || |||||||| | | |||||| | ||| Sbjct 32114 AGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCT 32055 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || || || || || || ||||||||||||||||| ||| Sbjct 32054 TCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCT 31995 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||||||| || | ||||| || || || || | || | ||| Sbjct 31994 TGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTC 31935 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||||||||| |||||||| ||||| Sbjct 31934 TTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || |||||||| ||||||||||| || | || ||| || | ||||| Sbjct 32339 ACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTACGTCCATCTTCC 32280 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||||||||| || |||| | || |||||| || || || || ||||| || ||||| Sbjct 32279 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGA 32220 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| || || | ||||| || || || || | || | |||||| Sbjct 32219 ATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACCTCCAGGGTGATTGTCTTG 32160 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || || || ||||| || ||||| Sbjct 32159 CCAGTTAATGTCTTGACGAAGATCTGCAT 32131 >seq8521 Length=40141 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | || || || || || |||||||| || | Sbjct 2474 ACCACCACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 2415 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | |||||||||||||| |||||| | || | || |||||| || || || Sbjct 2414 GAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGG 2355 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || ||||| ||| ||| ||| | | || || || || Sbjct 2354 GATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAAC 2295 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||||||||| || || || || ||||| Sbjct 2294 CTCCAGTGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || |||||||| || || | || ||| || | ||||| |||||| Sbjct 2221 TGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCTTCCAGCTGC 2162 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | || |||||| || || || || ||||| || || || || || Sbjct 2161 TTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTTG 2102 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| ||| | ||| ||| || || || |||| || | ||||||||||| Sbjct 2101 -GCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTCTTGCCGGT 2043 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | || || |||||||| ||||| Sbjct 2042 AAGGGTCTTCACGAAAATCTGCAT 2019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || ||||||||||| || | || ||| || | |||||||| ||| Sbjct 1993 TGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTACGACCATCTTCAAGTTGC 1934 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || |||||| || || ||||| ||||| || ||||| | | || Sbjct 1933 TTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGA-TCTT 1875 Query 64361 TGCTTTA 64367 |||||| Sbjct 1874 GGCTTTA 1868 >seq48539 Length=7100 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| || ||||| || | | |||||| | || || | |||| Sbjct 6689 TGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCCTCCAACTGC 6630 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | || |||||| || ||||| |||||||| || ||||| | | || Sbjct 6629 TTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGGA-TCTT 6571 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | ||| ||| | || ||||||| ||| | ||||| ||||| Sbjct 6570 GGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTCTTTCCGGT 6511 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||| || ||||| Sbjct 6510 AAGGGTCTTTACGAAGATCTGCAT 6487 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || |||||||||||||| || | | ||| || | ||||| | ||| Sbjct 6917 TGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCCAATTGC 6858 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || |||||| || || ||||||||||| || ||||| || || Sbjct 6857 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGAATCTTA 6798 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | ||||| || || ||||| | || | ||| ||||| || Sbjct 6797 GCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTGCCAGTA 6738 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || || ||||| |||||| Sbjct 6737 AGGGTCTTGACAAAAATCTGCATT 6714 >seq15643 Length=27379 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||||| |||| || || || || || || |||||||||| Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGA 12215 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || ||||| || ||||| | || | || |||||| || ||||| Sbjct 12214 AAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| ||||| | | || ||||| ||| || | || ||| || || | Sbjct 12154 GATTCCTTCTTTGTCTTGGA-TCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTA 12096 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || | || | ||| || || || | || || |||||||| |||||| Sbjct 12095 CCTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATT 12046 >seq4062 Length=67394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | || ||||| || || | || || || || || |||||||| || | Sbjct 48390 CCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 48331 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| |||||||||||||| | || |||| ||||||||| || || Sbjct 48330 AGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 48271 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| || || ||| ||| || | || ||| | ||||| Sbjct 48270 ATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACC 48211 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || || ||||| || ||||| Sbjct 48210 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 48164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499214893122960