Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq742 105 7e-18
>seq742
Length=196864
Score = 105 bits (116), Expect = 7e-18
Identities = 255/386 (66%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038
|| || | ||||| ||| ||| | ||||| | || || | || || || |||||
Sbjct 47351 GGGATCTACGACACCCTGAAGCAGTGTGCCCTGGTTTCCAAGTCTGCTGGAGGTATCGGC 47410
Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098
| ||| ||| | | || |||| ||||||||||||| ||||| || || ||||
Sbjct 47411 CTTCATGTACACTGCATCCGAGCCAAGGGTTCCTACATCGCGGGTACTAACGGAGTCTCC 47470
Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158
|| || | ||||| ||||| || || | ||| ||| |||| ||||| || ||||||||
Sbjct 47471 AATGGGTTGGTCCCCATGCTGCGTGTGTACAATAACACGGCCCGCTATGTAGACCAGGGA 47530
Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218
|| | |||| || ||||||| | || | ||||| |||||||||||| |
Sbjct 47531 GGAAACAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGCCGTGGCACGCGGACATATTT 47590
Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278
| ||| | ||| || |||||| || || || | | || | ||| | |||
Sbjct 47591 GAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAGTTCGTGCACGTGACTTATTC 47650
Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338
|||| | ||| | || || || || ||||| || ||||||| ||| | ||||||
Sbjct 47651 TACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAGCAACGAGGATTGGAGT 47710
Query 94339 CTTTTTTGTCCCAATGAATGTCCCGG 94364
|| | || ||| | || ||||||
Sbjct 47711 CTCATGTGCCCCCACGATGCTCCCGG 47736
Score = 104 bits (114), Expect = 2e-17
Identities = 198/289 (69%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135
|||||| || | ||| |||||||| | || |||||||| || |||||||| || |||||
Sbjct 48430 ACACGGAGTCAGGAACTCGCTGCTTCTCGCACCCATGCCTACCGCCTCCACCGCCCAGAT 48489
Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195
| || |||||||| || || ||||||||||| |||||| | |||| ||| |||| |
Sbjct 48490 TTTAGGAAACAACGAATCCTTTGAACCCTTCACTTCCAACATCTACACCAGAAGGGTCTT 48549
Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCTGGGTG 95254
| || ||||||| || | || | || || || || || ||| || || | |
Sbjct 48550 GTCTGGAGAATTCCAGGTTGTGAATCACCATCTACTGCGTGATTTGACCGAGGCT-GATT 48608
Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314
|||||| ||| | | || || | | | | |||||| ||| | || ||| |
Sbjct 48609 TGTGGGACGACGACATGAAAAATCTCATCATTGCCAACAACGGATCCATTCAAAACCTGG 48668
Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363
|||||| || |||||| | ||||||||||| || ||||| ||
Sbjct 48669 ACAGAATACCCAAGCACATCAGAGATCTCTACAAGACAGTTTGGGAAAT 48717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494297527790640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |