Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq742 105 7e-18 >seq742 Length=196864 Score = 105 bits (116), Expect = 7e-18 Identities = 255/386 (66%), Gaps = 0/386 (0%) Strand=Plus/Plus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| ||| ||| | ||||| | || || | || || || ||||| Sbjct 47351 GGGATCTACGACACCCTGAAGCAGTGTGCCCTGGTTTCCAAGTCTGCTGGAGGTATCGGC 47410 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 | ||| ||| | | || |||| ||||||||||||| ||||| || || |||| Sbjct 47411 CTTCATGTACACTGCATCCGAGCCAAGGGTTCCTACATCGCGGGTACTAACGGAGTCTCC 47470 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 || || | ||||| ||||| || || | ||| ||| |||| ||||| || |||||||| Sbjct 47471 AATGGGTTGGTCCCCATGCTGCGTGTGTACAATAACACGGCCCGCTATGTAGACCAGGGA 47530 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || | |||| || ||||||| | || | ||||| |||||||||||| | Sbjct 47531 GGAAACAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGCCGTGGCACGCGGACATATTT 47590 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | ||| | ||| || |||||| || || || | | || | ||| | ||| Sbjct 47591 GAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAGTTCGTGCACGTGACTTATTC 47650 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 |||| | ||| | || || || || ||||| || ||||||| ||| | |||||| Sbjct 47651 TACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAGCAACGAGGATTGGAGT 47710 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGG 94364 || | || ||| | || |||||| Sbjct 47711 CTCATGTGCCCCCACGATGCTCCCGG 47736 Score = 104 bits (114), Expect = 2e-17 Identities = 198/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 |||||| || | ||| |||||||| | || |||||||| || |||||||| || ||||| Sbjct 48430 ACACGGAGTCAGGAACTCGCTGCTTCTCGCACCCATGCCTACCGCCTCCACCGCCCAGAT 48489 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 | || |||||||| || || ||||||||||| |||||| | |||| ||| |||| | Sbjct 48490 TTTAGGAAACAACGAATCCTTTGAACCCTTCACTTCCAACATCTACACCAGAAGGGTCTT 48549 Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCTGGGTG 95254 | || ||||||| || | || | || || || || || ||| || || | | Sbjct 48550 GTCTGGAGAATTCCAGGTTGTGAATCACCATCTACTGCGTGATTTGACCGAGGCT-GATT 48608 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 |||||| ||| | | || || | | | | |||||| ||| | || ||| | Sbjct 48609 TGTGGGACGACGACATGAAAAATCTCATCATTGCCAACAACGGATCCATTCAAAACCTGG 48668 Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363 |||||| || |||||| | ||||||||||| || ||||| || Sbjct 48669 ACAGAATACCCAAGCACATCAGAGATCTCTACAAGACAGTTTGGGAAAT 48717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494297527790640