Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq35 383 2e-101 >seq35 Length=455554 Score = 383 bits (424), Expect = 2e-101 Identities = 661/949 (70%), Gaps = 16/949 (2%) Strand=Plus/Minus Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994 ||||||||||||||| | ||||| || ||| || ||||||||||| ||||| Sbjct 13182 GCCATCAACTGGAACAAAATCCAGGACGATAAAGACCTCGAAGTGTGGAACCGCCTGACG 13123 Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAG 156054 || |||||||||||||| ||| | ||| |||| || || | | ||||||| | Sbjct 13122 TCGAATTTCTGGCTGCCGGAAAAGGTGCCGTTGTCGAACGATATTCCGTCGTGGGCGACG 13063 Query 156055 CTGACCG---AGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTG 156111 || | || ||||| | | |||| | || || || || |||||||||||| ||||| Sbjct 13062 CTCAGCGCGCAGGAAAAACAACTGA---CGATCCGCGTATTTACCGGCCTGACGCTGCTG 13006 Query 156112 GACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCAC 156171 || ||| | || | |||||||| |||| || || || | || || ||| Sbjct 13005 GATACCGTGCAAAACGTGGTCGGCGCACCGACGCTGATGAAAGATGCGGTGACGCCACAC 12946 Query 156172 GAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCG-TGCACGCACGCAGCTACTC 156230 || || ||||| ||| | || ||| || ||||| |||| |||| || || || | Sbjct 12945 GAAGAAGCGGTTTACTCGAATATCTGCTTTATGGA-AGCGGTGCATGCGCGTTCTTA-TA 12888 Query 156231 GAACA-TCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGG 156289 | || | ||||||||||||||| ||||| ||| | || | || | ||||||| | Sbjct 12887 GTTCAATTTTCTCGACGCTGTGCGCCACCGTGGACGTGGATGAAGCCTACCGCTGGAGCG 12828 Query 156290 AGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACG 156349 |||| |||| | ||||| || || || | |||| | | || ||| |||| || | Sbjct 12827 AGGAAAACGTCGCGCTGCAAAATAAAGCGGCGATCATTTTGTCGTATTACGACGGCGAAG 12768 Query 156350 ACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCT 156409 | ||||| | | || |||||| | | | || ||| |||||||||||| ||| | Sbjct 12767 ATCCGCTGATGAAGAAAGTCGCCAGCGTGTTCCTTGAGTCGTTCCTGTTCTACTCCGGTT 12708 Query 156410 TCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCC 156469 | || |||||||||| ||||||| || | |||||||||||||||||| || |||||| Sbjct 12707 TTTATCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTCACCAACACCGCGGATCTGATCC 12648 Query 156470 GGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGG 156529 | || |||||||| ||||| || || ||||| |||||||||||||| || |||||||| | Sbjct 12647 GTCTGATCATCCGTGACGAAGCGGTTCACGGTTACTACATCGGCTATAAATTCCAGAAAG 12588 Query 156530 GCCTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGC 156589 |||| ||| | | | | || |||| | ||||||| | | | ||| ||| Sbjct 12587 CGCTGGCACTGGAAAGCGAAGAGCGTCAGCGTCAGATCAAGGAGCAGGCGTTTGATCTGA 12528 Query 156590 TGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCC 156649 | || ||| |||||||||| |||||| | || || || |||| ||| Sbjct 12527 TTCAGGATTTGTACGACAACGAGATCCGCTACACCGAAGAACTGTATGACGGTGTAGGCT 12468 Query 156650 AGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGG 156709 || ||| ||||||||||| ||||||| ||||||| |||||| || ||| ||| || | Sbjct 12467 GGAGCGAAGACGTGAAGAAATTCCTGCATTACAACGCCAACAAAGCGCTGATGAATCTCG 12408 Query 156710 GCTACGACGCGCTGTT--CAGCCGCAGCGACTGC-GACGTCAACCCGGCCATCCTGAGCG 156766 ||||||| || ||||| |||| |||| | || || || || ||||| ||||| || Sbjct 12407 GCTACGAAGCCCTGTTCCCAGC--CAGC-ATGGCGGATGTGAATCCGGCGATCCTCTCCG 12351 Query 156767 CGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACG 156826 | | ||||| | ||||| ||||||||||||||||| || || || | |||| | Sbjct 12350 CATTATCGCCAAACGCCGACGAAAACCACGACTTCTTCTCCGGATCCGGATCCTCGTATG 12291 Query 156827 TCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGATG 156875 | || | ||| | || ||||||||||| |||||||| |||||||| Sbjct 12290 TGATCGGCAAAGCCGTCAATACCGAAGACGAGGACTGGGATTTCTGATG 12242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526145301571680