Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq4080 98.7 8e-16 seq5235 95.1 9e-15 seq19158 91.5 1e-13 seq7299 84.2 2e-11 >seq4080 Length=81138 Score = 98.7 bits (108), Expect = 8e-16 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 108871 GTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGAC 108930 |||||| | | ||||| |||||||| |||||||||||||||||||||||||||| ||| Sbjct 14980 GTGGCGCTGATAGCTCTGGGCGAGGGTTGGCACAACTACCACCACGTGTTCCCCTGGGAC 14921 Query 108931 TACAAGGCCGCCGAGTTGGGGAACGAC 108957 |||||||| |||||| | || ||| || Sbjct 14920 TACAAGGCGGCCGAGCTCGGCAACTAC 14894 >seq5235 Length=70061 Score = 95.1 bits (104), Expect = 9e-15 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAA 108524 ||||||| || ||| | || ||||| |||| | || || |||| | ||||| ||||| Sbjct 37032 TGGGTGCGGGACCACCGTGTGCACCATAAGTTCAGCGAGACCGACG-CAGACCCTCACAA 36974 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 | ||||| | || |||| |||||||||||||| |||||||||||| |||| |||| || Sbjct 36973 CTCCAACCGCGGCTTCTTCTTCTCGCACGTGGGTTGGCTCATGATGCGCAAGCACCCGGA 36914 Query 108585 CGTGATCTCGGCCGGTCGAAAAATGGACATGACGGACAT 108623 ||| | | ||||| | | |||||||| ||||| Sbjct 36913 GGTGTTGAAGAGGGGTCGCACCGTCGACATGACCGACAT 36875 >seq19158 Length=22980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 108790 ACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGACCGTCCGTTCGACAAGAACATT 108849 || |||||||| || || || ||||||| || ||| || || | |||||||||||| Sbjct 717 ACCTGGCTGGTGAACTCAGCAGCGCACAAGTGGGGCAACAAGCCCTACGACAAGAACATC 776 Query 108850 TTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTAC 108909 ||| | |||| | ||||| ||| || || || ||||| | ||||||||| Sbjct 777 AGCCCCACCCAAAATATGAGCGTGGCCATGTTCGCGCTGGGAGAGGGCTTCCACAACTAC 836 Query 108910 CACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 |||||| ||||||| || |||||| |||| |||||||| ||| || Sbjct 837 CACCACACCTTCCCCTGGGATTACAAGACCGCGGAGTTGGGCAACAAC 884 >seq7299 Length=44543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 108882 GGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGC 108941 ||| || || ||||||||||||||||||||||| |||||||||| ||||||||||| || Sbjct 16734 GGCCCTGGGGGAGGGATGGCACAACTACCACCATGTGTTCCCCTGGGACTACAAGGCGGC 16675 Query 108942 CGAGTTGGGGAACGAC 108957 || |||| ||| || Sbjct 16674 TGAACTGGGCAACTAC 16659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381452525310096