Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6691 183 3e-41
seq223 181 1e-40
seq742 120 3e-22
seq8056 105 7e-18
seq48539 93.3 4e-14
>seq6691
Length=42033
Score = 183 bits (202), Expect = 3e-41
Identities = 343/489 (70%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400
|| ||||| | ||||| || ||||||||| |||||||| ||||| | | |||||
Sbjct 14418 AAGAAGGCAGACTGGGCCCTGCAGTGGATCGGCAGCGACACGGCCACCTTCGGGGAGCGT 14359
Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460
||||||||||||| || || || | || || |||||||| |||||| ||||||||
Sbjct 14358 GTGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTT 14299
Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520
| | || | | ||| | ||||||||| |||| ||||||||||||||||| || ||
Sbjct 14298 TGGCTGAAGAAGCGTGGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGA 14239
Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAA 52580
||||| || || ||| |||||||| |||||| | ||| || | || ||||
Sbjct 14238 GACGAGGGTCTCCACTGCGACTTTGCCTGCCTCATGTTCAA-ACACTTAGTACAGAAA-- 14182
Query 52581 TTGGATTCGGACACGA-TCCTGAGC-ATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGT 52638
| | ||||| |||| ||| || ||||||| || || || ||| | ||||
Sbjct 14181 -CCCAGCCCCGCACGAGTCCT-AGCTATCGTCAAGGATGCTGTCATCATTGAACAAGAGT 14124
Query 52639 TTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCGAG 52697
|| | || | ||| ||||| ||| || |||||||||||| ||| | |||| ||
Sbjct 14123 TTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCG-ACCTGATGTCGCAG 14065
Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAG-CCAAAGTACTTCAA 52756
|| || || |||||||| || || || |||||| | || |||| | | ||| ||| |
Sbjct 14064 TATATTGAATTTGTGGCCGACCGGCTCTTGGTGGACCT-GGGCTGTGCCAAGCACT--AC 14008
Query 52757 CGCTCGCA-ATCCGTTTGAG-TTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814
| || | | || || || || ||| ||| || || || || ||||||||||||||
Sbjct 14007 GGATCCAAGAACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAAGACCAACTTC 13948
Query 52815 TTCGAGAAG 52823
|||||||||
Sbjct 13947 TTCGAGAAG 13939
>seq223
Length=511576
Score = 181 bits (200), Expect = 1e-40
Identities = 329/476 (69%), Gaps = 4/476 (1%)
Strand=Plus/Minus
Query 28006 CGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTC-CCGTCGACAAAGTGCCCG 28064
||| ||||| || ||||||||||||||| || | | ||| |||| || ||| | || |
Sbjct 113971 CGCATATTTTGTTGAGTGGGGCGTGTATGGTCG-CGGATTCTCCGTGGATAAAATCCCTG 113913
Query 28065 CGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAA 28124
||| |||||| | || | ||||||| ||| |||||| |||||||| ||||| || |
Sbjct 113912 CGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATTA 113853
Query 28125 ACGACGCCCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGC 28184
||||| | || | | || |||||||| |||| |||| ||| | || || ||||
Sbjct 113852 ACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGGC 113793
Query 28185 GCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGG 28244
| || || || || |||| |||||||||||||| || | |||| ||| || | |
Sbjct 113792 GTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAAG 113733
Query 28245 GCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCG-TCAAA 28303
||||| | | | || || ||||| || ||||| || ||||| ||| | |||
Sbjct 113732 GCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATG-GCGCTGAAA 113674
Query 28304 TTAGCCAATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCA 28363
|||| |||| || |||| | | | || ||||| ||||||||| |||| |||||
Sbjct 113673 AAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCG 113614
Query 28364 TTCTTTCACATGCACGACGCGACCGTGCGCCAAACGTTCATCGATTCCGTCGTGGACTTT 28423
|||| | |||| | || | | ||| | ||| | | || || || ||
Sbjct 113613 TTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAAAGAATTC 113554
Query 28424 CTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGG 28479
|||| |||||||||||||| ||||| || || || || ||||| |||||||||||
Sbjct 113553 CTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498
>seq742
Length=196864
Score = 120 bits (132), Expect = 3e-22
Identities = 921/1470 (63%), Gaps = 33/1470 (2%)
Strand=Plus/Minus
Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086
|| || || || || || || || | ||| || | ||| || | ||| ||||||
Sbjct 48576 TGATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAG 48517
Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146
||||||||||||||||| || |||| || || || |||| ||||| |||||| ||
Sbjct 48516 GGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCG 48457
Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA-ATGTCGTCCTTCAACGCCTGCCAATC 153205
| | || || |||| | ||||| ||| || | | ||||| || ||| |
Sbjct 48456 AGAAGCAGCGAGTTCCTGACTCCGTGTA-TCGCGATCTTAGCTTTCAAGGCAGCCCAGTT 48398
Query 153206 CCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGG 153265
||||| | | || || || |||||| || || || | | ||| ||| | ||
Sbjct 48397 CCACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGG 48338
Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325
|| || | |||| ||| | || || | |||||| ||||| || || || ||
Sbjct 48337 ACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAG 48278
Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385
|| || || || | || || ||||||| ||| |||| |||| ||| |||||
Sbjct 48277 AGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218
Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445
| |||| | || | ||||| || || ||||| || || || || | ||||||||
Sbjct 48217 AAAAGGCAATCTCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGG 48158
Query 153446 TCGATGCTTCTCGTT-GCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504
|| || | ||| | || | | || | || || || || |||||||
Sbjct 48157 GCGGTGACGCATGTTCGATGTTC-TAGCTTCTGGTACAGGGTAAAAGTTAACGTCGATAA 48099
Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATC--ATA 153562
||||||| | || || || |||| ||| || || || || || |||
Sbjct 48098 TTTTGTTCAAATTTTTAGTGACAGTCTTGGTTACGATCTTCAGCTTTTCAAAGTCGAATA 48039
Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622
| ||| || || | ||| ||| || || ||||| |||| ||| ||||| ||
Sbjct 48038 CCTTATTA--TCTAC----AAACAT--ATTGACAGCGATAGAGGCCAAATTGCAGACAGC 47987
Query 153623 --CGTC-TCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679
| || |||| || |||| | || || || | ||||||||| ||||| || ||
Sbjct 47986 TACTTCATCTTTGGAAG---TGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAAT 47930
Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|||| |||||| || ||||| || || ||||||||||| ||| | |||||||| ||
Sbjct 47929 AGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGG 47870
Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCG 153799
|| || || ||||| | ||||| ||| | | || |||||| | |
Sbjct 47869 GGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCTGCGCCTTGATCTT 47810
Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859
|| | | | || || ||| ||||| || |||||| |||||| || || || |
Sbjct 47809 CTTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCA 47750
Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTT 153919
||| ||| | ||||||| | || || ||||| || ||| |||| | |
Sbjct 47749 GCACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTC 47690
Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979
||| || |||||||||||| || | ||| | |||| | | ||| || ||
Sbjct 47689 GACACGCTTCATGAACAGATCGGGGATCCACAAGCCGTAGAATAAGTCACGTGCACGAAC 47630
Query 153980 ATCCTCCGCGCCCATGTTGCGTTTC-AGATTGAGCACGCTATAGATGTCGGCGTGCCAGG 154038
|||||| || | || |||| || | || | | | | ||||| |||||||| |
Sbjct 47629 TTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTC-AAATATGTCCGCGTGCCACG 47571
Query 154039 GTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCA 154095
| |||| ||| | || | || || | | ||||| ||||| || || | |||
Sbjct 47570 GCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGG 47511
Query 154096 CCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAAT 154155
|| | || ||| | || |||| |||||| ||| || | | | ||||| ||
Sbjct 47510 CCGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCG 47451
Query 154156 TGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACT 154215
||| | | || ||| || | || || | || ||| || || || | |||
Sbjct 47450 CGATGTAGGAACCCTTGGCTCGGATGCAGTGTACATGAAGGCCGATACCTCCAGCAGACT 47391
Query 154216 TTGATATGGCAGCGCAGTC-GC-CCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCG 154273
| || | ||| ||| | || ||| || |||||| || || || ||||| ||||
Sbjct 47390 TGGAAA--CCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCT 47333
Query 154274 GACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGT 154333
| | | || | ||| || ||| ||| || ||| | |||| | || || || || ||
Sbjct 47332 CATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGT 47273
Query 154334 GGGACTCGCGTGCGTAAACAGTTTTTGGCT--CATCATGCGGTACGTTTCGATGGCGTCT 154391
|| || ||||| || | ||| ||| || || | | ||| ||||| |||||
Sbjct 47272 AGGGCTGGCGTGAGTGA--AGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAA 47215
Query 154392 TCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCG 154451
|| || || || ||||| || |||| | || | |||||||||||| ||||| | |||
Sbjct 47214 TCAATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCT 47155
Query 154452 GCGACTCTATTGTCAATCTTCAAGAGATAT 154481
| ||| | || ||||||| ||||||
Sbjct 47154 ACAACTTTCCCTTCGATCTTCAGCAGATAT 47125
>seq8056
Length=34938
Score = 105 bits (116), Expect = 7e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||| | ||| | || ||||| | | | |||||||| || || ||||| |||
Sbjct 32130 GCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGA 32071
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || || || | |||||| || | |||| ||||| ||||| ||||||||
Sbjct 32070 AAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGG 32011
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||||||||| ||| |||| | |||| | ||| | || || | | ||| |
Sbjct 32010 AATTCCTTCTTTGTCT-TGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAA 31952
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | ||| || || |||| |||||| || ||||||||||||
Sbjct 31951 CCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATG 31902
>seq48539
Length=7100
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||| | ||| | || || || | | | || |||||||| || ||||| |||
Sbjct 6486 GCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGA 6427
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||| || | || || || | | || || | ||| || || |||||
Sbjct 6426 GAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 6367
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565
|||||||||||||| ||| |||||| || | | ||| | || |||| | |||||
Sbjct 6366 GATACCTTCTTTGTCT-TGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCA 6308
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | ||| || ||||||| ||||| || ||||||||||||
Sbjct 6307 CCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATG 6258
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | || || || | | |||||||||||||||||||||||||
Sbjct 6941 CCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAA 6882
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || | ||| || || | | |||| | | ||| || || || ||
Sbjct 6881 AGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 6822
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| | || | |||| | ||| | ||| || | | || ||
Sbjct 6821 ATTCCTTCCTTGTC-TTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAAC 6763
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||||| ||||| || || || ||||||||||||||
Sbjct 6762 TTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495835403424480
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