Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6691 183 3e-41 seq223 181 1e-40 seq742 120 3e-22 seq8056 105 7e-18 seq48539 93.3 4e-14 >seq6691 Length=42033 Score = 183 bits (202), Expect = 3e-41 Identities = 343/489 (70%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 || ||||| | ||||| || ||||||||| |||||||| ||||| | | ||||| Sbjct 14418 AAGAAGGCAGACTGGGCCCTGCAGTGGATCGGCAGCGACACGGCCACCTTCGGGGAGCGT 14359 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 ||||||||||||| || || || | || || |||||||| |||||| |||||||| Sbjct 14358 GTGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTT 14299 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | ||| | ||||||||| |||| ||||||||||||||||| || || Sbjct 14298 TGGCTGAAGAAGCGTGGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGA 14239 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAA 52580 ||||| || || ||| |||||||| |||||| | ||| || | || |||| Sbjct 14238 GACGAGGGTCTCCACTGCGACTTTGCCTGCCTCATGTTCAA-ACACTTAGTACAGAAA-- 14182 Query 52581 TTGGATTCGGACACGA-TCCTGAGC-ATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGT 52638 | | ||||| |||| ||| || ||||||| || || || ||| | |||| Sbjct 14181 -CCCAGCCCCGCACGAGTCCT-AGCTATCGTCAAGGATGCTGTCATCATTGAACAAGAGT 14124 Query 52639 TTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCGAG 52697 || | || | ||| ||||| ||| || |||||||||||| ||| | |||| || Sbjct 14123 TTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCG-ACCTGATGTCGCAG 14065 Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAG-CCAAAGTACTTCAA 52756 || || || |||||||| || || || |||||| | || |||| | | ||| ||| | Sbjct 14064 TATATTGAATTTGTGGCCGACCGGCTCTTGGTGGACCT-GGGCTGTGCCAAGCACT--AC 14008 Query 52757 CGCTCGCA-ATCCGTTTGAG-TTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814 | || | | || || || || ||| ||| || || || || |||||||||||||| Sbjct 14007 GGATCCAAGAACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAAGACCAACTTC 13948 Query 52815 TTCGAGAAG 52823 ||||||||| Sbjct 13947 TTCGAGAAG 13939 >seq223 Length=511576 Score = 181 bits (200), Expect = 1e-40 Identities = 329/476 (69%), Gaps = 4/476 (1%) Strand=Plus/Minus Query 28006 CGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTC-CCGTCGACAAAGTGCCCG 28064 ||| ||||| || ||||||||||||||| || | | ||| |||| || ||| | || | Sbjct 113971 CGCATATTTTGTTGAGTGGGGCGTGTATGGTCG-CGGATTCTCCGTGGATAAAATCCCTG 113913 Query 28065 CGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAA 28124 ||| |||||| | || | ||||||| ||| |||||| |||||||| ||||| || | Sbjct 113912 CGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATTA 113853 Query 28125 ACGACGCCCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGC 28184 ||||| | || | | || |||||||| |||| |||| ||| | || || |||| Sbjct 113852 ACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGGC 113793 Query 28185 GCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGG 28244 | || || || || |||| |||||||||||||| || | |||| ||| || | | Sbjct 113792 GTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAAG 113733 Query 28245 GCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCG-TCAAA 28303 ||||| | | | || || ||||| || ||||| || ||||| ||| | ||| Sbjct 113732 GCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATG-GCGCTGAAA 113674 Query 28304 TTAGCCAATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCA 28363 |||| |||| || |||| | | | || ||||| ||||||||| |||| ||||| Sbjct 113673 AAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCG 113614 Query 28364 TTCTTTCACATGCACGACGCGACCGTGCGCCAAACGTTCATCGATTCCGTCGTGGACTTT 28423 |||| | |||| | || | | ||| | ||| | | || || || || Sbjct 113613 TTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAAAGAATTC 113554 Query 28424 CTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGG 28479 |||| |||||||||||||| ||||| || || || || ||||| ||||||||||| Sbjct 113553 CTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498 >seq742 Length=196864 Score = 120 bits (132), Expect = 3e-22 Identities = 921/1470 (63%), Gaps = 33/1470 (2%) Strand=Plus/Minus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 || || || || || || || || | ||| || | ||| || | ||| |||||| Sbjct 48576 TGATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAG 48517 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 ||||||||||||||||| || |||| || || || |||| ||||| |||||| || Sbjct 48516 GGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCG 48457 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA-ATGTCGTCCTTCAACGCCTGCCAATC 153205 | | || || |||| | ||||| ||| || | | ||||| || ||| | Sbjct 48456 AGAAGCAGCGAGTTCCTGACTCCGTGTA-TCGCGATCTTAGCTTTCAAGGCAGCCCAGTT 48398 Query 153206 CCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGG 153265 ||||| | | || || || |||||| || || || | | ||| ||| | || Sbjct 48397 CCACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGG 48338 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325 || || | |||| ||| | || || | |||||| ||||| || || || || Sbjct 48337 ACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAG 48278 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 || || || || | || || ||||||| ||| |||| |||| ||| ||||| Sbjct 48277 AGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218 Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445 | |||| | || | ||||| || || ||||| || || || || | |||||||| Sbjct 48217 AAAAGGCAATCTCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGG 48158 Query 153446 TCGATGCTTCTCGTT-GCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504 || || | ||| | || | | || | || || || || ||||||| Sbjct 48157 GCGGTGACGCATGTTCGATGTTC-TAGCTTCTGGTACAGGGTAAAAGTTAACGTCGATAA 48099 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATC--ATA 153562 ||||||| | || || || |||| ||| || || || || || ||| Sbjct 48098 TTTTGTTCAAATTTTTAGTGACAGTCTTGGTTACGATCTTCAGCTTTTCAAAGTCGAATA 48039 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | ||| || || | ||| ||| || || ||||| |||| ||| ||||| || Sbjct 48038 CCTTATTA--TCTAC----AAACAT--ATTGACAGCGATAGAGGCCAAATTGCAGACAGC 47987 Query 153623 --CGTC-TCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679 | || |||| || |||| | || || || | ||||||||| ||||| || || Sbjct 47986 TACTTCATCTTTGGAAG---TGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAAT 47930 Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| |||||| || ||||| || || ||||||||||| ||| | |||||||| || Sbjct 47929 AGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGG 47870 Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCG 153799 || || || ||||| | ||||| ||| | | || |||||| | | Sbjct 47869 GGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCTGCGCCTTGATCTT 47810 Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859 || | | | || || ||| ||||| || |||||| |||||| || || || | Sbjct 47809 CTTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCA 47750 Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTT 153919 ||| ||| | ||||||| | || || ||||| || ||| |||| | | Sbjct 47749 GCACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTC 47690 Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979 ||| || |||||||||||| || | ||| | |||| | | ||| || || Sbjct 47689 GACACGCTTCATGAACAGATCGGGGATCCACAAGCCGTAGAATAAGTCACGTGCACGAAC 47630 Query 153980 ATCCTCCGCGCCCATGTTGCGTTTC-AGATTGAGCACGCTATAGATGTCGGCGTGCCAGG 154038 |||||| || | || |||| || | || | | | | ||||| |||||||| | Sbjct 47629 TTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTC-AAATATGTCCGCGTGCCACG 47571 Query 154039 GTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCA 154095 | |||| ||| | || | || || | | ||||| ||||| || || | ||| Sbjct 47570 GCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGG 47511 Query 154096 CCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAAT 154155 || | || ||| | || |||| |||||| ||| || | | | ||||| || Sbjct 47510 CCGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCG 47451 Query 154156 TGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACT 154215 ||| | | || ||| || | || || | || ||| || || || | ||| Sbjct 47450 CGATGTAGGAACCCTTGGCTCGGATGCAGTGTACATGAAGGCCGATACCTCCAGCAGACT 47391 Query 154216 TTGATATGGCAGCGCAGTC-GC-CCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCG 154273 | || | ||| ||| | || ||| || |||||| || || || ||||| |||| Sbjct 47390 TGGAAA--CCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCT 47333 Query 154274 GACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGT 154333 | | | || | ||| || ||| ||| || ||| | |||| | || || || || || Sbjct 47332 CATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGT 47273 Query 154334 GGGACTCGCGTGCGTAAACAGTTTTTGGCT--CATCATGCGGTACGTTTCGATGGCGTCT 154391 || || ||||| || | ||| ||| || || | | ||| ||||| ||||| Sbjct 47272 AGGGCTGGCGTGAGTGA--AGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAA 47215 Query 154392 TCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCG 154451 || || || || ||||| || |||| | || | |||||||||||| ||||| | ||| Sbjct 47214 TCAATGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCT 47155 Query 154452 GCGACTCTATTGTCAATCTTCAAGAGATAT 154481 | ||| | || ||||||| |||||| Sbjct 47154 ACAACTTTCCCTTCGATCTTCAGCAGATAT 47125 >seq8056 Length=34938 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| | || ||||| | | | |||||||| || || ||||| ||| Sbjct 32130 GCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGA 32071 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || | |||||| || | |||| ||||| ||||| |||||||| Sbjct 32070 AAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGG 32011 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| |||| | |||| | ||| | || || | | ||| | Sbjct 32010 AATTCCTTCTTTGTCT-TGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAA 31952 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||| || || |||| |||||| || |||||||||||| Sbjct 31951 CCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATG 31902 >seq48539 Length=7100 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| | || || || | | | || |||||||| || ||||| ||| Sbjct 6486 GCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGA 6427 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || | || || || | | || || | ||| || || ||||| Sbjct 6426 GAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 6367 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||||| || | | ||| | || |||| | ||||| Sbjct 6366 GATACCTTCTTTGTCT-TGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCA 6308 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||| || ||||||| ||||| || |||||||||||| Sbjct 6307 CCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATG 6258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | ||||||||||||||||||||||||| Sbjct 6941 CCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAA 6882 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | |||| | | ||| || || || || Sbjct 6881 AGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 6822 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | |||| | ||| | ||| || | | || || Sbjct 6821 ATTCCTTCCTTGTC-TTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAAC 6763 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || || || |||||||||||||| Sbjct 6762 TTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495835403424480