Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq223 167 2e-36 seq8056 120 3e-22 seq15643 104 2e-17 seq4062 96.9 3e-15 seq8521 95.1 1e-14 seq48539 91.5 1e-13 seq742 84.2 2e-11 >seq223 Length=511576 Score = 167 bits (184), Expect = 2e-36 Identities = 326/476 (68%), Gaps = 12/476 (3%) Strand=Plus/Minus Query 22322 TATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCG 22381 |||||||| |||||||| ||||| |||| || ||| || || | || | || | Sbjct 113967 TATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAAATCCCTGCGCAG 113908 Query 22382 AACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGAC 22441 |||||| | ||| | | ||||| ||| ||| || |||||||| ||||| || |||||| Sbjct 113907 AACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATTAACGAC 113848 Query 22442 GCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTC--GTGCGTCAATAGAG 22499 | |||| | ||| || || |||| |||||||| | ||||| || Sbjct 113847 AGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGGCGTCAG 113788 Query 22500 CCGATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCG 22559 ||||| || || | ||||||||||| ||||| || || || | ||||| |||||| Sbjct 113787 --GATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAAGGCG 113730 Query 22560 T--GTCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAG 22617 | || | | | ||| || ||||| || |||||||| ||||||| |||||| Sbjct 113729 TCAGTGAATATTCAGC--ACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGAAAAA 113672 Query 22618 AGCGAATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTT 22677 ||| |||| | || ||| | | | || ||||| || ||||||||||| || ||||| Sbjct 113671 AGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCGTT 113612 Query 22678 TTATCATATGCACGACAAG--AACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTAT 22735 ||| ||| | || ||| | | | ||| | ||| | | ||||| |||| | Sbjct 113611 CTATTTCATGAAGGATAAGGCGAAGCGGGAC--GTCTTCGTAGCCTCGGTAAAAGAATTC 113554 Query 22736 TTGATCACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGG 22791 || || ||||||||||||||||| || |||||||| ||||| ||||| ||||| Sbjct 113553 CTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498 >seq8056 Length=34938 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || ||||| || || |||||||||||| | |||||| ||| || Sbjct 32112 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTC 32053 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || |||||||||||| |||| | || || ||||| ||||| || || || ||||| Sbjct 32052 TAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTG 31993 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| ||| | | ||||| || || | ||| || || | || | ||| || Sbjct 31992 AATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTT 31933 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||| |||||| || |||||||||||| Sbjct 31932 TCCGGTCAAAGTTTTCACGAAAATCTGCATG 31902 >seq15643 Length=27379 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||| | ||| || || | || ||||| || || ||||||||||| Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||||||||| ||| ||||||| | ||||||||| ||||| Sbjct 12213 AGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGG 12154 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||| || |||| | ||||| ||||| | ||| || Sbjct 12153 ATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACC 12094 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || || || || ||||||||||| Sbjct 12093 TCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 >seq4062 Length=67394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 ||||||||||| | | || ||||| || | || ||||| || || || ||||| || Sbjct 48393 GCTCCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 48334 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || | ||| || ||||| || || ||| |||||| | |||||| || || Sbjct 48333 GAAAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGG 48274 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| || ||| || ||||| ||||||| |||||| | | ||| Sbjct 48273 GGGATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCC 48214 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | || ||||| || || || || || || ||||||||| Sbjct 48213 ACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 48163 >seq8521 Length=40141 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || ||||| || | || || ||| || ||||| ||||| Sbjct 2671 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCCAGCTGCTTTCCG 2612 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | ||||||||| || || || || |||||||| ||| || ||| Sbjct 2611 GCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCCTTA 2552 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || |||| ||| | || || || |||||||| Sbjct 2551 ACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTCAGAGTC 2492 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 2491 TTGACGAAGATCTGCAT 2475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | || ||||||||||| || ||||| ||| Sbjct 2930 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGA 2871 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | || ||||| || ||||||| | ||||||||| || || Sbjct 2870 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 2811 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||| || || | | || | ||||| | ||| || Sbjct 2810 GATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAAC 2751 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || |||||||| ||||| ||||| |||||||| Sbjct 2750 CTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 >seq48539 Length=7100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || || || ||||| |||||||||||| | || || || || Sbjct 6468 CACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTC 6409 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || |||||| | |||| | ||||||||| ||||| || || || ||||| | Sbjct 6408 CAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCT-T 6350 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || ||| ||| || | | ||| | || || | | ||| || || | || | ||| | Sbjct 6349 GAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCT 6290 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| |||| ||||| || |||||||||||| Sbjct 6289 TGCCAGTCAAGGTTTTCACGAAAATCTGCATG 6258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | || ||||| |||||||| ||||| || Sbjct 6942 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGA 6883 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | || ||||| || ||||||| | ||||||||| || || Sbjct 6882 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 6823 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| || || ||| | | ||| | ||| || | || || Sbjct 6822 AATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAAC 6763 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | |||||||| || || || || |||||||||||||| Sbjct 6762 TTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 >seq742 Length=196864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 146629 TTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACA 146688 ||||| |||||||||||||| || || || || || || ||| || | || Sbjct 48018 TTGACAGCGATAGAGGCCAAATTGCAGACAGCTACTTCATCTTTGGAAGTGTATTCAACT 47959 Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT- 146747 || || | ||||||||| |||||||| || | |||| ||||| |||||| || ||| Sbjct 47958 ATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCT---CTTT 47902 Query 146748 --GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACG 146805 |||||| | ||||||||| |||||||| || || ||||| || | | |||| | Sbjct 47901 CGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGATG 47842 Query 146806 ATG 146808 ||| Sbjct 47841 ATG 47839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475091667224160