Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_011802.1
Length=41941
Score E
Sequences producing significant alignments: (Bits) Value
seq6760 280 4e-71
seq725 257 4e-64
>seq6760
Length=71796
Score = 280 bits (310), Expect = 4e-71
Identities = 362/500 (72%), Gaps = 0/500 (0%)
Strand=Plus/Plus
Query 1496 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 1555
|||||||| || || ||||| || || || || || || || | || || ||||| |
Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396
Query 1556 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 1615
|| | ||||| |||||||||| |||||| | | |||||| || ||| |||| ||
Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456
Query 1616 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 1675
||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | |
Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516
Query 1676 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 1735
|| | || || || ||||| || || || ||||| |||||||| || ||||| || ||
Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576
Query 1736 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 1795
|| || |||||||| | |||||| || || ||||| | |||||| |||||||| |
Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636
Query 1796 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 1855
|||| ||||| ||||| || || || || |||||| || || || ||||| ||
Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696
Query 1856 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 1915
||||| ||||| || | || ||||| || || || || || |||||||| ||
Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756
Query 1916 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 1975
|||||||| ||||| || || || || |||||||| | || || |||||||||||||||
Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816
Query 1976 TCAGCTGTCTTACGCTTCAA 1995
||||| | |||||||| ||
Sbjct 16817 TCAGCGCTTTTACGCTTAAA 16836
>seq725
Length=236385
Score = 257 bits (284), Expect = 4e-64
Identities = 489/708 (69%), Gaps = 13/708 (2%)
Strand=Plus/Plus
Query 3658 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 3717
|||||||||| || | || || || | || || ||||| | || |||||||||||
Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986
Query 3718 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 3777
| ||| || ||||| || | || || || |||||| ||||| || ||||| || ||
Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046
Query 3778 CGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTA 3837
|| || || | ||| || | | ||||| |||| || |||||| ||||| | |||
Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103
Query 3838 -GGCTTGAATACTGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 3893
||| ||||| | ||| | |||| ||||| |||| | || |||
Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162
Query 3894 CCAGTTTTCCTCATGCCGCCGATTAGTCATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 3953
||||||| | ||| || ||| ||| || ||| || | ||| || || | ||
Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222
Query 3954 GGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 4013
||||||||||||||||| || |||| |||||||| ||||||||||| ||||| || ||
Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282
Query 4014 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTC 4073
|||||||||||| || ||||| | ||| || || |||||||| | ||||||||| ||
Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342
Query 4074 AAAAGTCATGTCAGGCGTCTCTCCTAATTTATTTACCCTCCATGCTTCTGCCTTCAGTTT 4133
|||||| | |||||| || || | | || | ||| |||| || |||
Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402
Query 4134 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 4192
||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| |||||
Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461
Query 4193 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 4252
||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| |
Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521
Query 4253 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAG 4312
|||||| ||| |||||| | ||||| |||||| | | ||| | ||
Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578
Query 4313 TGCCGCAATGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTCGGTTT 4360
||| ||||| || ||||| || ||| || ||||||||| || |||||
Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626
Score = 158 bits (174), Expect = 3e-34
Identities = 152/195 (78%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 3120 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 3179
|||||||| ||||||||||||| |||||||| | ||| || || || || || ||
Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539
Query 3180 CAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACCATTTCGATAGACTCCCAGCCACC 3239
| ||||| || |||||||| || |||| || ||||| ||||| ||||||||||| ||
Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599
Query 3240 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAGCTTGCCCACGTGTG 3299
||||||||| | || || | ||| || || ||||||| | |||||||||||| |||||
Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659
Query 3300 CCTCAGGTCATGAAA 3314
|||||||| |||||
Sbjct 175660 TCTCAGGTCGTGAAA 175674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133979994658124
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |