Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_011976.1
Length=43016
Score E
Sequences producing significant alignments: (Bits) Value
seq6760 329 9e-86
seq725 277 5e-70
>seq6760
Length=71796
Score = 329 bits (364), Expect = 9e-86
Identities = 380/512 (74%), Gaps = 0/512 (0%)
Strand=Plus/Plus
Query 20141 ATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCACCAAGGACA 20200
||| |||| || | || ||| | || ||||||| ||||||||||||||||| || ||
Sbjct 16322 ATAAATCGTGGTCTTTGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACG 16381
Query 20201 CCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTATTGAAACTAACAATGATGGATAT 20260
||||| ||||||| ||| | ||| || |||||||| || ||||| || | || |||||
Sbjct 16382 CCAATACCTATTAGCTGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAA 16441
Query 20261 CCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCATAAATGAAG 20320
|| |||| || || || | || |||| | |||||| || | || || |||
Sbjct 16442 CCATGAACGGGGTTGCCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAA 16501
Query 20321 GACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGAAA 20380
||| | ||| ||| |||||| || || ||||||||||||| || || ||||||||
Sbjct 16502 GACAGACCGGCCACAAAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAAC 16561
Query 20381 CTTGTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTGAGTTGCCG 20440
|||||| ||||| || || |||||||| |||||||| ||||||||||||| |||
Sbjct 16562 GATGTTATGCCTTCGAGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCG 16621
Query 20441 GCAACACGCTCAGCCCTTGAATACTCAACAACATCAATTTTTCCACCTACCCATGACAAA 20500
||||| || ||| | | | ||| || ||||| ||| | ||||| ||||| |||| |
Sbjct 16622 GCAACGCGTTCATCTCGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGA 16681
Query 20501 ACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTTTATGTTTTCAACAACTTCTCGC 20560
|| ||||||||||||| || || ||||| || | || |||||||| || || | ||
Sbjct 16682 ACCCCTTTCATGAATAAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGA 16741
Query 20561 GACATCAAGCGGAAATCACCAACGTTTTCTTCGATTTTAGGGTTGCTAATTTTGTTGTGT 20620
||||| || | |||||| ||||||||||| || || ||||| ||||| || |||| ||
Sbjct 16742 GACATTAACCTGAAATCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGG 16801
Query 20621 AGCTTATAGAACCACTCAGCCGATTTGCGCTT 20652
|||||||| ||||||||||| ||| |||||
Sbjct 16802 AGCTTATAAAACCACTCAGCGCTTTTACGCTT 16833
>seq725
Length=236385
Score = 277 bits (306), Expect = 5e-70
Identities = 516/745 (69%), Gaps = 21/745 (3%)
Strand=Plus/Plus
Query 22232 CATTCATCAATCAGGCGTTTTGCCTCTTCTTTCTCCAGCCATCTGACGCGTTTGTTTCTG 22291
|||||||||| |||||||| || || | | || |||||||||||||| || ||| |
Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986
Query 22292 ACGGCTGGAACCTTGATTACAGGCGCTTTCTCCAGCCATTTCCAGTCACGTTCTGCTGCA 22351
| ||| || || || || ||||||||||||||||||||||| || |||||||| ||
Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046
Query 22352 CGCAGAATAGCCTTCATTAATGCCAGGTGTTTGGCCTTAGTGGAGGTTTTGACCGGTTTA 22411
||||| | | |||||| | || |||||||| ||||| |||| || ||||| |
Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGTGCTGACCTTCTGG 174106
Query 22412 -GCTGAATAGATTGGTGCAGGTTC--TCCATTCTTCTGCGCCGCGGCAGCTTTGATTTT- 22467
||| | || |||| || ||| ||| | ||| |||| || || ||| |
Sbjct 174107 CGCTCA-TACTTTGGCGC---TTCGATCCCTC--TCTTCGCCAAGGA--CTGTGAATGCA 174158
Query 22468 --CCATA-TCTCAAGCTGTTTG-CGGTTGCTCATCTTGTTTACTGCTAAGTAAATCTTTT 22523
| || | | |||| | ||||| ||| ||| | | || ||| || |||
Sbjct 174159 ACCGATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGAT-TTTG 174217
Query 22524 GCT-CGGTTACATCCTTTAACCGTACTCCCTCAAAATGCGCCAGCCAGAAAGCCATACGG 22582
||| |||| | |||||| ||| || || ||||||||| ||||||||| |||| |||
Sbjct 174218 GCTTCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGG 174277
Query 22583 CTACGGTCATCTTTCAGTGATTTCTTCTCCGCTTTTTCCTCAAGCCAGCGCATGCAGGCA 22642
|| |||||| | ||| ||||||||||| || ||| || | ||| | | |||||
Sbjct 174278 CTTTTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCC 174337
Query 22643 TCATCAAACGTTACATCAGGGAAATCACCAAGCCTGTCTACTCGCCACAATTCAGCTTTG 22702
|| ||||| || || ||||| ||||| || |||| ||||| |||||| | || | |||
Sbjct 174338 TCTTCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTT 174397
Query 22703 CGCTTGTCATGTAGCTCAGTAGCGAGCCGCTTGTCGGAAGTCCCAAGGCTTTCCTTAATT 22762
| ||||| || ||||| || || ||||| | |||||||| ||| |||| |
Sbjct 174398 CTTTTGTCGTGCAGCTCCTGTGCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGT 174457
Query 22763 CGCTTCCCGCCCGGTGTCGAGTAGGACGCGTACCATATTTCACCTCTGCGGAAGATAGAC 22822
| | ||||||||| |||| || ||||||||| || | |||||| ||||||||||||
Sbjct 174458 CTTTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGAC 174517
Query 22823 ATTTTCTTTCCTCTTTTATGTCATCACCCGCGCTCACCTTAACAGTATGCAGCGGAGATT 22882
|| || ||||||| ||| |||||| | ||||| ||||| | | ||| |
Sbjct 174518 ATGTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTAT 174574
Query 22883 GAAGCGCCGCAATGCAGGCTTGTCGTGTGGTGAGGTAAGGAGATTTCGGTTTGGTGGGGT 22942
|| || ||||| || ||||| || ||| || |||||| || || ||||| | || |
Sbjct 174575 TCAGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGATGGAT 174634
Query 22943 CTTTGCGTGTTGCCTGAAGGCGGCC 22967
| ||||| || |||| ||||||
Sbjct 174635 CCTTGCGCTCGGCGTGAACGCGGCC 174659
Score = 208 bits (230), Expect = 2e-49
Identities = 219/288 (76%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 21601 CTTCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCACCATTATATATCAACTGG 21660
|||||||||||| |||| ||||||||| |||| |||||| |||||| | | |||
Sbjct 175387 CTTCTAAGCCGTAGGTCACAGGTTCGAGCCCTGTAGGGCGTACCATTCAAAAACAATCAC 175446
Query 21661 TTACGCCTCTTTAATTCCCTCCTTATTTTCCATATGGGACATATTTGTGACATCATCACT 21720
||| | | | |||||||| | || | ||||||| ||||| |||| | | |
Sbjct 175447 TTAGCTGTTTGTTGTTCCCTCCGAAATTAGCGAGTGGGACAGATTTGGGACAGAAACCCC 175506
Query 21721 GAAAATCGAGTCAATTTGCTTCGCGTGTTCCGTTAAATGATTCGGCGCAAGGTGAGCATA 21780
||||| | ||| || ||||||||||| |||||||||||||||||||| || || || ||
Sbjct 175507 AAAAATAGCGTCTATCTGCTTCGCGTGCTCCGTTAAATGATTCGGCGCCAGATGCGCGTA 175566
Query 21781 TCGGCGCACCATATCGATGCTCTCCCATCCTCCCATTTCCTGCAGAACAGAAAGCGGCAC 21840
||| || ||||| ||||| |||||| || ||||||||||| ||||| || | ||| ||
Sbjct 175567 TCGCCGTACCATCTCGATCGACTCCCAGCCGCCCATTTCCTGAAGAACTGACAACGGGAC 175626
Query 21841 TCCGGACTGAATTAGCCAACTGGCCCACGTGTGCCTCAGATCGTGGAA 21888
|||| |||||| ||||| || ||||| ||||| ||||| ||||| ||
Sbjct 175627 ACCGGCCTGAATCAGCCAGCTTGCCCATGTGTGTCTCAGGTCGTGAAA 175674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137417182789224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |