Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq6760 329 9e-86 seq725 277 5e-70 >seq6760 Length=71796 Score = 329 bits (364), Expect = 9e-86 Identities = 380/512 (74%), Gaps = 0/512 (0%) Strand=Plus/Plus Query 20141 ATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCACCAAGGACA 20200 ||| |||| || | || ||| | || ||||||| ||||||||||||||||| || || Sbjct 16322 ATAAATCGTGGTCTTTGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACG 16381 Query 20201 CCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTATTGAAACTAACAATGATGGATAT 20260 ||||| ||||||| ||| | ||| || |||||||| || ||||| || | || ||||| Sbjct 16382 CCAATACCTATTAGCTGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAA 16441 Query 20261 CCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCATAAATGAAG 20320 || |||| || || || | || |||| | |||||| || | || || ||| Sbjct 16442 CCATGAACGGGGTTGCCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAA 16501 Query 20321 GACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGAAA 20380 ||| | ||| ||| |||||| || || ||||||||||||| || || |||||||| Sbjct 16502 GACAGACCGGCCACAAAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAAC 16561 Query 20381 CTTGTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTGAGTTGCCG 20440 |||||| ||||| || || |||||||| |||||||| ||||||||||||| ||| Sbjct 16562 GATGTTATGCCTTCGAGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCG 16621 Query 20441 GCAACACGCTCAGCCCTTGAATACTCAACAACATCAATTTTTCCACCTACCCATGACAAA 20500 ||||| || ||| | | | ||| || ||||| ||| | ||||| ||||| |||| | Sbjct 16622 GCAACGCGTTCATCTCGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGA 16681 Query 20501 ACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTTTATGTTTTCAACAACTTCTCGC 20560 || ||||||||||||| || || ||||| || | || |||||||| || || | || Sbjct 16682 ACCCCTTTCATGAATAAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGA 16741 Query 20561 GACATCAAGCGGAAATCACCAACGTTTTCTTCGATTTTAGGGTTGCTAATTTTGTTGTGT 20620 ||||| || | |||||| ||||||||||| || || ||||| ||||| || |||| || Sbjct 16742 GACATTAACCTGAAATCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGG 16801 Query 20621 AGCTTATAGAACCACTCAGCCGATTTGCGCTT 20652 |||||||| ||||||||||| ||| ||||| Sbjct 16802 AGCTTATAAAACCACTCAGCGCTTTTACGCTT 16833 >seq725 Length=236385 Score = 277 bits (306), Expect = 5e-70 Identities = 516/745 (69%), Gaps = 21/745 (3%) Strand=Plus/Plus Query 22232 CATTCATCAATCAGGCGTTTTGCCTCTTCTTTCTCCAGCCATCTGACGCGTTTGTTTCTG 22291 |||||||||| |||||||| || || | | || |||||||||||||| || ||| | Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986 Query 22292 ACGGCTGGAACCTTGATTACAGGCGCTTTCTCCAGCCATTTCCAGTCACGTTCTGCTGCA 22351 | ||| || || || || ||||||||||||||||||||||| || |||||||| || Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046 Query 22352 CGCAGAATAGCCTTCATTAATGCCAGGTGTTTGGCCTTAGTGGAGGTTTTGACCGGTTTA 22411 ||||| | | |||||| | || |||||||| ||||| |||| || ||||| | Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGTGCTGACCTTCTGG 174106 Query 22412 -GCTGAATAGATTGGTGCAGGTTC--TCCATTCTTCTGCGCCGCGGCAGCTTTGATTTT- 22467 ||| | || |||| || ||| ||| | ||| |||| || || ||| | Sbjct 174107 CGCTCA-TACTTTGGCGC---TTCGATCCCTC--TCTTCGCCAAGGA--CTGTGAATGCA 174158 Query 22468 --CCATA-TCTCAAGCTGTTTG-CGGTTGCTCATCTTGTTTACTGCTAAGTAAATCTTTT 22523 | || | | |||| | ||||| ||| ||| | | || ||| || ||| Sbjct 174159 ACCGATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGAT-TTTG 174217 Query 22524 GCT-CGGTTACATCCTTTAACCGTACTCCCTCAAAATGCGCCAGCCAGAAAGCCATACGG 22582 ||| |||| | |||||| ||| || || ||||||||| ||||||||| |||| ||| Sbjct 174218 GCTTCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGG 174277 Query 22583 CTACGGTCATCTTTCAGTGATTTCTTCTCCGCTTTTTCCTCAAGCCAGCGCATGCAGGCA 22642 || |||||| | ||| ||||||||||| || ||| || | ||| | | ||||| Sbjct 174278 CTTTTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCC 174337 Query 22643 TCATCAAACGTTACATCAGGGAAATCACCAAGCCTGTCTACTCGCCACAATTCAGCTTTG 22702 || ||||| || || ||||| ||||| || |||| ||||| |||||| | || | ||| Sbjct 174338 TCTTCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTT 174397 Query 22703 CGCTTGTCATGTAGCTCAGTAGCGAGCCGCTTGTCGGAAGTCCCAAGGCTTTCCTTAATT 22762 | ||||| || ||||| || || ||||| | |||||||| ||| |||| | Sbjct 174398 CTTTTGTCGTGCAGCTCCTGTGCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGT 174457 Query 22763 CGCTTCCCGCCCGGTGTCGAGTAGGACGCGTACCATATTTCACCTCTGCGGAAGATAGAC 22822 | | ||||||||| |||| || ||||||||| || | |||||| |||||||||||| Sbjct 174458 CTTTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGAC 174517 Query 22823 ATTTTCTTTCCTCTTTTATGTCATCACCCGCGCTCACCTTAACAGTATGCAGCGGAGATT 22882 || || ||||||| ||| |||||| | ||||| ||||| | | ||| | Sbjct 174518 ATGTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTAT 174574 Query 22883 GAAGCGCCGCAATGCAGGCTTGTCGTGTGGTGAGGTAAGGAGATTTCGGTTTGGTGGGGT 22942 || || ||||| || ||||| || ||| || |||||| || || ||||| | || | Sbjct 174575 TCAGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGATGGAT 174634 Query 22943 CTTTGCGTGTTGCCTGAAGGCGGCC 22967 | ||||| || |||| |||||| Sbjct 174635 CCTTGCGCTCGGCGTGAACGCGGCC 174659 Score = 208 bits (230), Expect = 2e-49 Identities = 219/288 (76%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 21601 CTTCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCACCATTATATATCAACTGG 21660 |||||||||||| |||| ||||||||| |||| |||||| |||||| | | ||| Sbjct 175387 CTTCTAAGCCGTAGGTCACAGGTTCGAGCCCTGTAGGGCGTACCATTCAAAAACAATCAC 175446 Query 21661 TTACGCCTCTTTAATTCCCTCCTTATTTTCCATATGGGACATATTTGTGACATCATCACT 21720 ||| | | | |||||||| | || | ||||||| ||||| |||| | | | Sbjct 175447 TTAGCTGTTTGTTGTTCCCTCCGAAATTAGCGAGTGGGACAGATTTGGGACAGAAACCCC 175506 Query 21721 GAAAATCGAGTCAATTTGCTTCGCGTGTTCCGTTAAATGATTCGGCGCAAGGTGAGCATA 21780 ||||| | ||| || ||||||||||| |||||||||||||||||||| || || || || Sbjct 175507 AAAAATAGCGTCTATCTGCTTCGCGTGCTCCGTTAAATGATTCGGCGCCAGATGCGCGTA 175566 Query 21781 TCGGCGCACCATATCGATGCTCTCCCATCCTCCCATTTCCTGCAGAACAGAAAGCGGCAC 21840 ||| || ||||| ||||| |||||| || ||||||||||| ||||| || | ||| || Sbjct 175567 TCGCCGTACCATCTCGATCGACTCCCAGCCGCCCATTTCCTGAAGAACTGACAACGGGAC 175626 Query 21841 TCCGGACTGAATTAGCCAACTGGCCCACGTGTGCCTCAGATCGTGGAA 21888 |||| |||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 175627 ACCGGCCTGAATCAGCCAGCTTGCCCATGTGTGTCTCAGGTCGTGAAA 175674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137417182789224