Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq742 235 5e-57 seq223 215 5e-51 seq48539 118 1e-21 seq8056 118 1e-21 >seq742 Length=196864 Score = 235 bits (260), Expect = 5e-57 Identities = 1177/1861 (63%), Gaps = 29/1861 (2%) Strand=Plus/Plus Query 122832 GATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTC 122891 |||| | | || || || ||||||| ||||| || || | |||| || || ||| Sbjct 47081 GATTTCAATTATAACTACTTTGGATTTAAAACCTTGGAGCGCTCATATCTGCTGAAGATC 47140 Query 122892 GAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC 122951 || | || || | ||| | ||||| ||||||||| | || || | || | ||| Sbjct 47141 GAAGGGAAAGTTGTAGAAAGACCGCAACACATGCTCATGAGGGTATCTGTCGGTATCCAC 47200 Query 122952 GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACG 123011 || ||||| || || | ||||||||| | | |||| | |||| ||||| Sbjct 47201 GGGGAAGACATTGATTCAGCCATTGAAACTTACAACCTTCTGTCAGAGAAATACTTCACT 47260 Query 123012 CACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTT 123071 ||||| || || ||| | ||| |||| | |||| |||||| ||||||| || || Sbjct 47261 CACGCCAGCCCTACTCTATTCTCCGCAGCCACGCCCCGTCCTCAGCTGTCTTCTTGCTTC 47320 Query 123072 TTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCG 123131 | || || || |||| || || || || ||||| || || || | || || Sbjct 47321 CTACTGGCCATGAGCGATGATAGTATTGAAGGGATCTACGACACCCTGAAGCAGTGTGCC 47380 Query 123132 TTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA 123191 || ||||||| | || || || || ||| | | || ||| | | ||| | || Sbjct 47381 CTGGTTTCCAAGTCTGCTGGAGGTATCGGCCTTCATGTACACTGCATCCGAGCCAAGGGT 47440 Query 123192 AGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTAC 123251 | |||| | || ||||| || || ||| | | |||||||||| || ||| Sbjct 47441 TCCTACATCGCGGGTACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCGTGTGTAC 47500 Query 123252 AATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAAGGCGCGATG-----GCGA 123306 |||||| | | || | || |||||||| || |||| | |||| || | || | Sbjct 47501 AATAACACGGCCCGCTATGTAGACCAGGGAGG-AAACA-AGAGGCCCGGAGCTTTCGCTA 47558 Query 123307 TCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGG 123366 | || | || |||||||||| || | | || || ||| | || ||| || | | Sbjct 47559 TTTACGTTGAGCCGTGGCACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTG 47618 Query 123367 GGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTA 123426 | ||| ||| || || || || || |||| || ||| | |||||| |||| | Sbjct 47619 GAAAGGAGGAAGTTCGTGCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCA 47678 Query 123427 TGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG-TCCCGGC 123485 || || || | | ||| | ||| |||||||| ||| | || || ||||||| Sbjct 47679 TGAAGCGTGTCGAGAGCAACGAGGATTGGAGTCTCATGTGCCCCCA-CGATGCTCCCGGC 47737 Query 123486 TTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG- 123544 || ||| | || | | ||||| | ||||| | | ||||| |||||| Sbjct 47738 TTACACGAGTGCTGGGGAGAAGAATTTGAGGCTCTGTACACACGCTACGAAGCCGAAGGT 47797 Query 123545 ----CAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACAC 123600 | || | | ||| | | | || ||||| | || |||||| | | Sbjct 47798 CGTTCTAAGAAGAAGATCAAGGCGCAG-AC----TTTGTGGATGGCCATCATCGAATCTC 47852 Query 123601 AAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATC 123660 |||| ||||| ||||| || |||||||| ||||| ||||| |||||| | || | ||| | Sbjct 47853 AAGTAGAAACGGGAACCCCCTACATGCTGTACAAGGACGCGTGCAACCGAAAGAGCAACC 47912 Query 123661 AGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCG 123720 | || ||||||| || || || ||||| || ||| | ||||| | ||||||| Sbjct 47913 AACAAAATCTGGGAACTATTAAGTGCAGTAACCTCTGCACAGAAATAGTTGAATACAC-- 47970 Query 123721 ATGCC---GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCG 123777 | || ||| |||| || || || |||||||| || || || ||| | || | Sbjct 47971 -TTCCAAAGATGAAGTAGCTGTCTGCAATTTGGCCTCTATCGCTGTCAATATGTTTGTAG 48029 Query 123778 AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGT-AGTAAAGAAT 123836 | || | || | || ||| ||| || | |||| || ||||| | |||| ||| Sbjct 48030 ATAATAAGGTATTCGACTTTGAAAAGCTGAAGATCGTAACCAAGACTGTCACTAAA-AAT 48088 Query 123837 TTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTG 123896 ||||||||||||||||| ||||| ||||| ||| | ||||| | || || || Sbjct 48089 TTGAACAAAATTATCGACGTTAACTTTTACCCTGTACCAGAAGCTAGAACATCGAACATG 48148 Query 123897 AAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGC 123956 ||| | || |||| | || || ||||| |||| || || ||||| | || | Sbjct 48149 CGTCACCGCCCCATCGGTATTGGAATACAAGGCCTGGCAGATGCTTTTGTCTTAATGAGA 48208 Query 123957 ATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTAT 124016 |||| | || || || |||| || | || ||| |||||| || ||| | ||| Sbjct 48209 TTGCCTTTTGAGAGTGAAAAAGCCCAGCTTCTGAATCAACAAATATTTGAGACATTGTAT 48268 Query 124017 TACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTAC 124076 ||||| ||| |||| || || ||||| || || | | | || | ||||| | ||| Sbjct 48269 TACGGTGCTCTGGAAGCAAGTTGCGAGCTGGCCGAGAAGGAGGGTACATACGAGACGTAC 48328 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 | || | || | ||| ||| ||| | || || || |||||| | | || ||| Sbjct 48329 CCAGGATGTCCTGTCAGCAAAGGGATTCTTCAATATGAGATGTGGGACAAGAAGCCTACA 48388 Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAA-CAACGCATATCGACGCACGGTTTGCGTAACTC 124195 |||||||| ||||| | || ||| | | | || ||| ||||| | | ||||| Sbjct 48389 GATTTGTGGAACTGGGCTGCCTTGAAAGCTAAG-ATCGCGATACACGGAGTCAGGAACTC 48447 Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255 |||| | | || |||||| || || |||| || || |||||||||||||||||||| Sbjct 48448 GCTGCTTCTCGCACCCATGCCTACCGCCTCCACCGCCCAGATTTTAGGAAACAACGAATC 48507 Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 ||| || || |||||| ||| | ||| || | || || | || || || || || Sbjct 48508 CTTTGAACCCTTCACTTCCAACATCTACACCAGAAGGGTCTTGTCTGGAGAATTCCAGGT 48567 Query 124316 GATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCG 124375 | ||||| ||| | || || ||| | | |||||| || || ||||| Sbjct 48568 TGTGAATCACCATCTACTGCGTGATTTGACCGAGGCTGATTTGTGGGACGACGACATGAA 48627 Query 124376 CAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGT 124435 || || ||||| | || | | || | | | || || | ||| | Sbjct 48628 AAATCTCATCATTGCCAACAACGGATCCATTCAAAACCTGGACAGAATACCCAAGCACAT 48687 Query 124436 CAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGCCGT 124495 || | || ||||| || || |||||||| || ||| | | || | ||||| | Sbjct 48688 CAGAGATCTCTACAAGACAGTTTGGGAAATTTCCAACAAAATACTGATCAAGATGGCAGC 48747 Query 124496 CGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCAC 124555 ||||||||| || | | || |||||||| || || ||| | || || || |||| Sbjct 48748 CGACCGAGGAGCCTTTATTGACCAAAGTCAGTCCTTCAACATACACGTGGCAGAGCCCAA 48807 Query 124556 CTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCAT 124615 ||||| | || || ||| | | | |||| | || | || || || || Sbjct 48808 CTACGGAAAGCTCACTTCTATCCACTTCTATGGCTGGAAGATGGGCTTGAAGACTGGAAT 48867 Query 124616 GTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAATCTAA 124675 ||||||||| ||||| || || || | |||| || || || ||||| |||||| ||| Sbjct 48868 GTATTACTTGAGAACAAAGCCTGCCGTAAATGCTATCCAGTTCACCGTTGACAAAGTTAA 48927 Query 124676 A 124676 | Sbjct 48928 A 48928 >seq223 Length=511576 Score = 215 bits (238), Expect = 5e-51 Identities = 334/477 (70%), Gaps = 0/477 (0%) Strand=Plus/Plus Query 50640 CCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAGTCAGCAGAAAC 50699 ||||| ||||| ||||| || || || || ||||| || |||||||| || |||| || Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 50700 TCGCGTACCGATTCCACAAAAACGGCTCGTTTTTCCGCGTCGTGCATGTGAAAAAATGGA 50759 || |||||| | || || ||| | || || || || | |||| | | || || Sbjct 113558 TCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGGG 113617 Query 50760 TCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGTGCGGGTTGGCttttttt 50819 || ||||||||||| || || || || || | | || |||| || | ||||||||| Sbjct 113618 TCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTTC 113677 Query 50820 ATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTCCAAGCCGAGACGCCCTTT 50879 | ||||||||| ||||| ||||| ||||| || ||| | | | |||||| | Sbjct 113678 AGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTGC 113737 Query 50880 TGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTTTAAAATCGGCTCGGCCG 50939 || || |||| ||||||||||| || ||||| || | ||||||||||| || || Sbjct 113738 TGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCCC 113797 Query 50940 GCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGGTTTTCAACGCGTCGTTGACG 50999 || || | || |||| |||| ||||||||| | | |||| || |||||| | Sbjct 113798 GCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTAATC 113857 Query 51000 CCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATGCGACAAATTGGGGGCAGGA 51059 || || ||||||||||||||| ||| ||||||| | ||| | || || | ||||| Sbjct 113858 CCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCAGGG 113917 Query 51060 ATTTTGTCAGCGGCGAACGCACGCGCGTACACTCCCCATTCTACAAAATACGCGGCA 51116 ||||| || ||| ||| | || | ||||| ||||| || |||||||| ||| || Sbjct 113918 ATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCGCCA 113974 >seq48539 Length=7100 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| | || || || ||||||||||||||||| |||||| Sbjct 6488 ATGCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCG 6429 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || ||||| || || || ||| | |||| | ||||| || || Sbjct 6428 GAGAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGA 6369 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| |||||||||||| || | ||| | || ||||||| ||| Sbjct 6368 GGGATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCC 6309 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | ||| ||||| || | ||||| || ||||| ||||| Sbjct 6308 ACCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||||||||| || ||| | ||| ||| ||||| || Sbjct 6689 TGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCCTCCAACTGC 6630 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | ||||| | ||||| || || || || ||||| || ||||| || || Sbjct 6629 TTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGGATCTTG 6570 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | ||||| |||| ||| ||||| ||||||| || || ||||| Sbjct 6569 GCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTCTTTCCGGTA 6510 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || ||||| Sbjct 6509 AGGGTCTTTACGAAGATCTGCAT 6487 >seq8056 Length=34938 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| | ||| || || || ||||| |||||||| |||||| Sbjct 32132 ATGCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCG 32073 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || ||||||||||| ||| | || | ||||| || ||||| Sbjct 32072 GAAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGA 32013 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| || | ||| | || || || | ||| Sbjct 32012 GGAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCA 31953 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||| || ||||| | |||||| || ||||| ||||| Sbjct 31952 ACCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | ||| || ||||| || || ||||| || || || || || ||| Sbjct 32360 ATACCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCG 32301 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || ||| | ||||| | ||||| || || Sbjct 32300 GAGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGG 32241 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| |||||||||||||| |||| ||| | || || || | ||| Sbjct 32240 GGGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCG 32181 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| |||| || || || || || ||||| Sbjct 32180 ACCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451614285146640