Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq742 127 3e-24 seq6691 105 8e-18 >seq742 Length=196864 Score = 127 bits (140), Expect = 3e-24 Identities = 928/1466 (63%), Gaps = 49/1466 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| ||| | || |||||| | || ||||| || || || ||||| |||||| Sbjct 48534 TAGATGTTGGAAGTGAAGGGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAG 48475 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCC---ACCCCCCTAAT-GCG 116018 || || ||||||||||| | || || ||| | || || | | | | | || Sbjct 48474 GCGGTAGGCATGGGTGCGAGAAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCT 48415 Query 116019 TTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT-GTCTCCCCCTCCCACATATCAAACT 116077 ||| | ||| |||||| | | || | | || | |||||||| ||| | | Sbjct 48414 TTC----AAGGCAGCCCAGTTCCACAA-ATCTGTAGGCTTCTTGTCCCACATCTCATATT 48360 Query 116078 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 | || || |||| | | || |||| | ||||| |||| ||||| ||| | Sbjct 48359 GAAGAATCCCTTTGCTGACAGGACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGG 48300 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 ||| ||| | || || || || || ||| ||||| ||||||||| || | ||||| Sbjct 48299 CCAGCTCGCAACTTGCTTCCAGAGCACCGTAATACAATGTCTCAAATATTTGTTGATTCA 48240 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257 || ||| | || ||||| | | | || | ||| |||| || || | Sbjct 48239 GAAGCTGGGCTTTTTCACTCTCAAAAGGCAATCTCATTAAGACAAAAGCATCTGCCAGGC 48180 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACG 116316 |||| | || | || || ||||| || | ||| || || ||| ||| ||| || Sbjct 48179 CTTGTATTCCAATACCGATGGGGCGGTGACGCATGTTCGATGTTCTAGCT-TCTGGTACA 48121 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT---GAT- 116372 || ||||| || ||||||| | || | |||||| |||||| ||| || ||| Sbjct 48120 GGGTAAAAGTTAACGTCGATAATTTTGTTCAAATTTTTAGTGACAGTCTTGGTTACGATC 48061 Query 116373 TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 116432 |||| ||||||| | || || | | || | || ||| || || | || Sbjct 48060 TTCA----GCTTTTCAAAGTCGAA--TAC----CTTATTATCTACAAACATATTGACAGC 48011 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 ||| || |||| ||| || |||| ||||| || |||||| || | ||||| || Sbjct 48010 GATAGAGGCCAAATTGCAGACAGCTACTTCATCTTTGGAAGTGTATTCAACTATTTCTGT 47951 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 || | || | |||||| || |||| || | ||| || |||| ||| ||||| Sbjct 47950 GCAGAGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGC 47891 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||| ||||| || || || ||||| || ||| || | || || ||| |||| Sbjct 47890 GTCCTTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCA 47831 Query 116613 TACA-TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 116671 | | || ||| || | | | || | || || || | ||||| |||||| | Sbjct 47830 CAAAGTCTGCGCCTTGATCTTCTTC-TTAGAACGACCTTCGGCTTCGTAGCGTGTGTACA 47772 Query 116672 GGGCCTCAAACTCTTCACCCACAGC-CTC-TGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 | |||||||| ||||| ||| |||| ||| || |||| || || | | || || | Sbjct 47771 GAGCCTCAAATTCTTCTCCC-CAGCACTCGTGTAAGCCG-GGAGCATCGTGGGGGCACAT 47714 Query 116730 GAGAGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 |||| ||| | || | | ||| || ||||||||||| || || |||||||| | Sbjct 47713 GAGACTCCAAT--CCTCGTTGCTCTCGACACGCTTCATGAACAGATCGGGGATCCACA-A 47657 Query 116788 GCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 |||| |||| | || || ||| |||| || | || ||| ||| || || Sbjct 47656 GCCGTAGAATAAGTCACGTGCACGAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAA 47597 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC- 116905 || || | || |||||||||||||| || | ||| | |||| | | || || | Sbjct 47596 GAATTCAAATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAG-CTCCGGGCCTCT 47538 Query 116906 ---GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 || |||||| |||||| | ||||| || | || || ||||| || | | Sbjct 47537 TGTTTCCTCCCTGGTCTACATAGCGGGCCGTGTTATTGTACACACGCAGCATGGGGACCA 47478 Query 116963 TACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTG 117020 |||| || || || || ||| ||| || || || ||||||| || ||| Sbjct 47477 ACCCATTGGAGACTCCGTTAGTACCCGCGATGTAGGA-AC-CCTTGGCTCGGATGCAGTG 47420 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 | || | || ||||| || || |||| || | | || |||| | | || || | Sbjct 47419 TACATGAAGGCCGATACCTCCAGCAGACTTGGAAACCAGGGCACACTGCTTCAGGGTGTC 47360 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 ||||||||| || || ||| | | | || | |||||||| |||| || || Sbjct 47359 GTAGATCCCTTCAATACTATCATCGCTCATGGCCAGTAGGAAGCAAGAAGACAGCTGAGG 47300 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACA 117199 | || || | ||| ||| || || || | ||||| |||| || | | |||| Sbjct 47299 ACGGGGCGTGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAAGTATTTC-TCTGACA 47241 Query 117200 TCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCC 117259 | ||| || || | | | || ||||||||||||||| ||||||| || |||| Sbjct 47240 GAAGGTTGTAAGTTTCAATGGCTGAATCAATGTCTTCCCCGTGGATACCGACAGATACCC 47181 Query 117260 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 117319 ||| | ||||| ||| ||| |||| | | | || |||| | || | || || Sbjct 47180 TCATGAGCATGTGTTGCGGTCTTTCTACAACTTTCCCTTCGATCTTCAGCAGATATGAGC 47121 Query 117320 TCTCCAAGGTCTTGAGACCAAAATAG 117345 ||||||||| || | ||||| ||| Sbjct 47120 GCTCCAAGGTTTTAAATCCAAAGTAG 47095 >seq6691 Length=42033 Score = 105 bits (116), Expect = 8e-18 Identities = 346/524 (66%), Gaps = 18/524 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| ||| ||||||||||||||| ||||| || || ||| ||| | ||||| Sbjct 13924 GTATTCCCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCATGTCCAT 13983 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTG-TTGGCACC-CCAATCTGTTTGAGGAGA 127348 || || |||||||| || ||| | || ||||||| || | | | ||| Sbjct 13984 GAAGCTGAAGGGGTTCTTGGA--TCCGTAGTGCTTGGCACAGCCCAGGTCCACCAAGAGC 14041 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | || | ||||| |||| |||||| || ||||||| || | || | Sbjct 14042 CGGTCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTG 14101 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || ||||| || ||| | | |||||| ||||| ||| ||||| || Sbjct 14102 ACGGGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCT 14161 Query 127469 TGAA-TAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG-CAA 127523 | | | ||| | | ||| | | ||| |||| || ||| | | ||| ||| Sbjct 14162 AGGACTCGTG-CGGGGCTGGGTTTCT---GTACTAAGTGTTTGAACA-TGAGGCAGGCAA 14216 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||||||||||||||| |||||||| | || || |||| || || |||| Sbjct 14217 AGTCGCAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCA 14276 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||| || |||||||||| ||| || || | ||| ||| ||||||||||| || | Sbjct 14277 TGAGGCCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTT 14336 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG--CGGGACTTTGTATCAAACCA 127701 | || || ||||| || | | |||||| | |||| | || | | || | | ||| Sbjct 14337 CTACGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTG--CCGATCCA 14394 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCT 127745 || || ||||| | |||||| |||| | ||| || | ||||| Sbjct 14395 CTGCAGGGCCCAGTCTGCCTTCTTCTTCACACACGGTAGGGTCT 14438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612979323067440