Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6691 192 9e-44 seq742 120 5e-22 >seq6691 Length=42033 Score = 192 bits (212), Expect = 9e-44 Identities = 374/545 (69%), Gaps = 17/545 (3%) Strand=Plus/Plus Query 159627 ACTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 |||| | ||||| | || ||||||||||| |||||||||||||| |||| ||| || Sbjct 13917 ACTTTTGGTATTCCCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCA 13976 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCA 159746 |||||||| | ||| |||||||| ||| |||| | | | || || || ||| Sbjct 13977 TGTCCATGAAGCTGAAGGGGTTCTTGGATCCGTAGTGCTTGGCACAGCCCAGGTCCACCA 14036 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGC 159805 | || ||| ||||||||||| || || || | ||||| | || ||||| || ||||| Sbjct 14037 AGAGCCGGTCGGCCACAAATTCAATATA-CTGCGACATCAGGTCGCAGTTCATGCCCAGT 14095 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 || || ||||| || || || | |||||||| | ||||| ||| || || | || Sbjct 14096 AGTCTGACGGGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACG 14155 Query 159866 ATCTGCGA-GACACGTTCGTACCCCGGCT--TGCCCAAAATGTGGTCCTTAAACAGGAGG 159922 || || | ||| ||| || | || | || | || ||| || |||| |||| Sbjct 14156 AT-AGCTAGGACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGT-----TTGAACATGAGG 14209 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || |||||||||||||| || |||||||| || ||||| ||||||||| | | | | | Sbjct 14210 CAGGCAAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAG 14269 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||||| |||||| || |||||||| |||| |||||| ||| || ||| Sbjct 14270 CCGGGCATGAGGCCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAG 14329 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCA 160099 || || || ||| || || ||||| | | ||| || || | ||| || | || | Sbjct 14330 ATTCCTTCTACGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCC- 14388 Query 160100 TGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCG 160159 | ||||| |||||| || |||||||| | ||||| | | ||| || ||| Sbjct 14389 --GATCCACTGCAGGGCCCAGTCTGCCTTCTTCTTCACACACGGTAGGGTCTCCACAGCG 14446 Query 160160 TTAAA 160164 || || Sbjct 14447 TTGAA 14451 >seq742 Length=196864 Score = 120 bits (132), Expect = 5e-22 Identities = 471/729 (65%), Gaps = 20/729 (3%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || || || || ||||| | ||||| |||||| | |||| || || ||||| | Sbjct 47964 TCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTC 47905 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || ||||| || | ||||||||||| |||| | || |||| | || | |||||| Sbjct 47904 TTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCG 47845 Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGACT 205061 | ||| ||||||| | |||| | | |||| || | | |||| | | Sbjct 47844 ATGATGGCCATCCACAAAGTCTGCGCCTTGATCTTCTTCT--TAGAACGACCTTCGGCTT 47787 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGAC 205118 |||| ||||||||| ||| |||| || || | || ||| | |||| | | Sbjct 47786 CGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAGCACTCGTGTA--AGCCGGGAGC 47729 Query 205119 ATTTTTTGGGACACATCAGAGACCACATCTGATCGT--CTTTC-ACCCTCTCCATAAACA 205175 || | ||| ||||| ||| ||| ||| |||| || || || | || ||| |||| Sbjct 47728 ATCGTGGGGG-CACATGAGACTCCA-ATCC--TCGTTGCTCTCGACACGCTTCATGAACA 47673 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 | ||| |||||||| |||||| || | ||||| || | || | | || | |||| | Sbjct 47672 GATCGGGGATCCACAAGCCGTAGAATAAGTCACGTGCACGAACTTCCTCCTTTCCAGTAT 47613 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 ||||||||||||| | | | ||||| |||||||||||||| | | | || | Sbjct 47612 TCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGA 47553 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 || || ||||||||||| || |||||||| || ||| | | | ||| | || | Sbjct 47552 AAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGCCGTGTTATTGTACACAC 47493 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 ||||||| || |||| || |||| | ||||| || | |||| || || | | Sbjct 47492 GCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGCGATGTAGGAACCCTTGG 47433 Query 205416 CCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA 205473 | | | | || | ||| ||| || || |||| | |||||| | | |||| || Sbjct 47432 CTCGGATGCAGTGTACATG--AAGGCCGATACCTCCAGCAGACTTGGAAACCAGGGCACA 47375 Query 205474 CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCA 205533 || | ||| ||| |||||| ||| | || ||| || || | || || |||| Sbjct 47374 CTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCATGGCCAGTAGGAAGCA 47315 Query 205534 CGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593 |||| ||||| | | | ||| | ||| ||| || || ||||||||||| |||| Sbjct 47314 AGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAA 47255 Query 205594 GCGCTTCTC 205602 | ||||| Sbjct 47254 GTATTTCTC 47246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794471028587040