Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4062 154 3e-32
seq8056 127 5e-24
seq48539 120 7e-22
seq8521 116 9e-21
seq15643 107 5e-18
>seq4062
Length=67394
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| ||||| || |||||||| || |||||||| |||| ||||||||| | | |||
Sbjct 48384 CGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTC 48325
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| ||||||||||||||||| ||||||||||| || | ||||||||| || ||||||
Sbjct 48324 CTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCT 48265
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| ||| || ||||| |||||| | | || || || |
Sbjct 48264 TCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGG 48205
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| |||||||| || ||||| || || ||
Sbjct 48204 GTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTG 48167
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
|| ||||||||||| |||||| |||||||||| ||||| | | || |||||| |||||
Sbjct 48290 CTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCGGACTACAACATCCAG 48349
Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|| ||||| || || ||||| || |||| |||||
Sbjct 48350 AAGGAGTCCACCCTCCACCTGGTGCTGAGGCTTCG 48384
>seq8056
Length=34938
Score = 127 bits (140), Expect = 5e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
||||| ||||||||||| |||| ||||| || | | || | |||||||| | ||
Sbjct 32105 TGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCTAATTGT 32046
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
||||| |||||||| ||||| || || |||||| |||||||||| || ||||| ||
Sbjct 32045 TTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGAATTTTC 31986
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || ||||| || |||| | || || ||||| ||||||||||| || ||
Sbjct 31985 GCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTTCCGGTC 31926
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| ||||||||| ||||| ||
Sbjct 31925 AAAGTTTTCACGAAAATCTG 31906
Score = 84.2 bits (92), Expect = 5e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || ||||| || || || || || || || | ||||||||| | | ||
Sbjct 32352 TCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGT 32293
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||||||||||||| || ||||| || | | |||||| || || || ||
Sbjct 32292 ACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATGCC 32233
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| || ||||| || ||| ||| ||| | || |||| | ||| || ||||
Sbjct 32232 TTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACCTCCAG 32173
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | || || || || || ||
Sbjct 32172 GGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTG 32134
>seq48539
Length=7100
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| || || ||||||||||| | ||||||||| | | || | |||||||
Sbjct 6926 AGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCT 6867
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||||| || ||||| | | |||||| || || ||||||||| ||
Sbjct 6866 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCT 6807
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || ||| | ||| |||| | ||| || ||||| ||||| ||
Sbjct 6806 TGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTT 6747
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || |||||||| ||
Sbjct 6746 TTGCCAGTAAGGGTCTTGACAAAAATCTG 6718
>seq8521
Length=40141
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || ||||| || ||||| || |||| ||||||||||| | || | |||||||
Sbjct 2686 AGGACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCT 2627
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||||||||||||||| | | |||||| || || ||| ||||| ||
Sbjct 2626 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCT 2567
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || || | |||||| | | || || || | ||||| |||
Sbjct 2566 TGGATCTTGGCCTTAACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTC 2507
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| || || || || ||
Sbjct 2506 TTCCCAGTCAGAGTCTTGACGAAGATCTG 2478
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| ||||| |||||||| || | ||| ||||||| | || | |||||||
Sbjct 2230 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCT 2171
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||||||||||||||| | | |||||| || || || ||||| |||
Sbjct 2170 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2111
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||| || | ||||| | | || || || | ||||| |||
Sbjct 2110 TGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTC 2051
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| ||||| ||
Sbjct 2050 TTGCCGGTAAGGGTCTTCACGAAAATCTG 2022
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| ||||| || |||||||| |||| ||||||||| | | ||| | ||||||
Sbjct 2458 AGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 2399
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||||||||| ||||| | | |||||| || || || ||||| |||
Sbjct 2398 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGTCC 2339
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || || ||| || || | |||| | | ||| || |||| || || |||
Sbjct 2338 TGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGGTC 2279
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||| || ||||| || ||
Sbjct 2278 TTGCCGGTCAAAGTCTTGACAAAGATCTG 2250
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| || |||||||| ||||||| ||||||||| | | || | |||||||
Sbjct 2914 AGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCT 2855
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||||| || ||||| | | |||||| || || || ||||| |||
Sbjct 2854 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2795
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||| || | ||||||| | || || || | ||||| |||
Sbjct 2794 TGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTC 2735
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| ||||| || ||
Sbjct 2734 TTCCCGGTCAGGGTTTTGACAAAGATCTG 2706
>seq15643
Length=27379
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| || || | ||| || || |||||||| |||| ||||| || | | ||
Sbjct 12268 TCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAAAGGGT 12209
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||| || ||||| |||||||||||||| | | |||||| || ||| |||||
Sbjct 12208 ACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCC 12149
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|||| || || ||||| || || ||||| ||||| | | ||||| || |
Sbjct 12148 TTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACCTCAAG 12089
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || ||||| || || ||||| ||||| ||
Sbjct 12088 GGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 12050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177881867041878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |