Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq8521 111 2e-19
seq48539 87.8 2e-12
seq4062 87.8 2e-12
seq8056 86.0 7e-12
seq15643 84.2 2e-11
>seq8521
Length=40141
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 2455 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 2396
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| ||||| || ||||| | |||||| || | || | | ||||||||| |
Sbjct 2395 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGTCCTGG 2336
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| || ||||| || | | |||| | ||| || |||| || ||||| |||
Sbjct 2335 ATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGGTCTTG 2276
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || || |||||||| |||||
Sbjct 2275 CCGGTCAAAGTCTTGACAAAGATCTGCAT 2247
>seq48539
Length=7100
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||||| | ||| | ||||| || | || ||||||||||||||||| ||||
Sbjct 6487 TGCCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGG 6428
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || || || |||| || | ||||||||| ||||| |||| | |||||| || | |
Sbjct 6427 AGAGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAG 6368
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | || ||||| || || ||| | | | | ||| ||| | ||||
Sbjct 6367 GGATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCA 6308
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
| |||| || || || ||||| |||| ||||| || || || ||||| |||
Sbjct 6307 CCTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTTG 6255
>seq4062
Length=67394
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|| |||||| || | || |||||| ||||| |||||||| || || || | | ||
Sbjct 48376 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTCCTGCCATC 48317
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| ||||||||||||||||| |||| | ||||||||| | || | | ||||| ||
Sbjct 48316 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTATC 48257
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
|||||| ||||| | | ||||| | ||||| || | ||||| ||
Sbjct 48256 TTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGGGTGATAGT 48197
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACA 46601
|||||||| || || || || ||||| ||||| || |||
Sbjct 48196 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATGAACA 48156
>seq8056
Length=34938
Score = 86.0 bits (94), Expect = 7e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | |||||| || ||||| | ||| || || || || |||||||||||
Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || | || || ||||||||||| ||||| ||||| | |||||| || | ||
Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||||| || || || ||||| | | | || || | ||| ||
Sbjct 32237 ATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACC 32178
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| || ||||| || | || || || ||||| |||||
Sbjct 32177 TCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131
>seq15643
Length=27379
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||||||||| || || || || || | || |||||||| || ||||||||
Sbjct 12238 CTCCTTCTGGATATTGTAATCTGAAAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAA 12179
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | |||||| || | || | | || ||||| |||||| |||| |
Sbjct 12178 GATCAACCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATT 12119
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| | || || || | ||||||||||| ||||| || || || ||
Sbjct 12118 TTCGATAGTGTCAGAGGGCTCTACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCAC 12059
Query 46582 AAAGATTTGCATTTTG 46597
|| || |||||| ||
Sbjct 12058 GAAAATCTGCATTGTG 12043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564752054749680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |