Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6691 289 3e-73 seq223 219 4e-52 seq48539 129 6e-25 seq4062 109 5e-19 seq15643 105 7e-18 seq8056 105 7e-18 seq8521 104 2e-17 >seq6691 Length=42033 Score = 289 bits (320), Expect = 3e-73 Identities = 422/594 (71%), Gaps = 13/594 (2%) Strand=Plus/Plus Query 132551 AAAAGTCCGCATCCAAAGTAAAGGTGTCGTCC------TTGGCAAACATCACGCCAAATT 132604 |||| || ||||||| ||| || | |||| ||||| ||| || || | | Sbjct 13863 AAAAATCTGCATCCAGAGTGAACACATTGTCCATGCGGTTGGC---CATTACTCCCCACT 13919 Query 132605 TTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCG 132664 |||| ||||| || ||||| ||||| || || || || || || |||| ||| || | Sbjct 13920 TTTGGTATTCCCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCATGT 13979 Query 132665 TCATAAAATCCAAGGGGTTGGCTGTGTT--GTAGTGCTTGGTGCCGATCAGGTCGACGAG 132722 ||| || |||||||| || | | ||||||||||| | | |||||| || | Sbjct 13980 CCATGAAGCTGAAGGGGTT--CTTGGATCCGTAGTGCTTGGCACAGCCCAGGTCCACCAA 14037 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 |||| ||||||||| || || || || |||||||| ||||| || | ||||| || Sbjct 14038 GAGCCGGTCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAG 14097 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 | || ||||| || ||||||||||| ||| || ||| ||| || || ||||||| Sbjct 14098 TCTGACGGGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGAT 14157 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAA 132902 | || || || | ||| || || || || || |||||||| | ||| ||||| Sbjct 14158 AGCTAGGACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAA 14217 Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962 |||||| || | |||||||| | ||| || | ||||||||||| |||||||||||||| Sbjct 14218 GTCGCAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCAT 14277 Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022 |||||| || || || |||||||| |||| ||| |||||||| || ||||||| || || Sbjct 14278 GAGGCCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTC 14337 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCG 133082 ||| ||||| ||||||| ||||| ||||| ||||| | |||| ||||||| | Sbjct 14338 TACGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTG 14397 Query 133083 CAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| ||||| || ||||| | || || ||||| | || || | ||||| || Sbjct 14398 CAGGGCCCAGTCTGCCTTCTTCTTCACACACGGTAGGGTCTCCACAGCGTTGAA 14451 >seq223 Length=511576 Score = 219 bits (242), Expect = 4e-52 Identities = 360/516 (70%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 62202 GCCCAGCAGCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTC 62261 ||||||| |||||| | || ||||||||||| |||||||| | |||| ||||| Sbjct 113473 GCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTC 113532 Query 62262 GAACAGCTTCCACGTCTGCAGAAACTCGCGCGCCGACTCGACGAACGCGCGCCGCGCGTT 62321 || | |||||| || ||||| || || |||| | ||||| || |||| || Sbjct 113533 AAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGC---TT 113589 Query 62322 CGCGTCGTGCAT-ATGG--TAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAG 62378 ||| | | | | ||| || ||||| || |||| |||||||| |||||||| || | Sbjct 113590 CGCCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGAC 113649 Query 62379 CACGCGCAGGTGCGGGTGCGCTTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTA 62438 | ||||| || | ||||| || | ||||||||||| || || || || || || Sbjct 113650 AATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATA 113709 Query 62439 CGGCTCGCTCCACGCGGTCACGCCCTTTTGCGGCTTTTGCACGGCCGCCCACGGGTCGTG 62498 || | | | | ||||| | || ||| | ||||| || ||||| || ||||| Sbjct 113710 AGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTG 113769 Query 62499 CACCGCCAGTTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCC 62558 | ||| | ||| || || | || ||||| || | ||| |||| |||| || ||||| Sbjct 113770 TATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCC 113829 Query 62559 CGCGATGGACTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTA 62618 | | ||| || | |||||||| || |||||||||||||| |||||| ||||||||| Sbjct 113830 CTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTA 113889 Query 62619 CAGCAGATGCGTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAACTCGCGTCCGTACAC 62678 || | ||| || ||||| || | || | || || ||| || |||| || ||||| Sbjct 113890 CAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACAC 113949 Query 62679 GCCCCACTCGACGAAATAGGCGCCCACCACCTTGCC 62714 ||||||||| || ||||| ||||| || |||||||| Sbjct 113950 GCCCCACTCAACAAAATATGCGCCAACGACCTTGCC 113985 >seq48539 Length=7100 Score = 129 bits (142), Expect = 6e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || ||||| ||||| | || ||||| || || || | || || ||| Sbjct 6253 AACAACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAG 6312 Query 38298 GCCACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | |||| | | || ||||| | || | |||||| | |||||||| || || || | Sbjct 6313 CCTTCCGATACGATTGAAAACG-TGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCC 6371 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||| |||| |||| ||| ||||| ||| |||| |||| || |||||| ||| Sbjct 6372 AGATCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGA 6431 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||||||||| | || || || |||||||| ||| | |||| ||| Sbjct 6432 TTACAATATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGGC 6486 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||||||||||||| | || || || || | Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| |||| | || || | ||||| || ||||||||| | || || Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || || |||| || | || ||||| |||||||| Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| | || || || ||||| || ||| || | || || Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 6941 >seq4062 Length=67394 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| |||| || ||| | | Sbjct 48164 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGCCTTCT 48223 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | || | || | || |||| || || || ||||| ||| | ||||| Sbjct 48224 GACACCATCGAACATGTCAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCAG 48283 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| || | | || || ||||||||| Sbjct 48284 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCGGACTACAAC 48343 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| ||||| | || || || |||||||| Sbjct 48344 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 48376 >seq15643 Length=27379 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || ||||| |||||||||||| | || || ||| || | Sbjct 12046 AATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCCTC 12105 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | |||| || |||| |||||||| ||||| || | || || Sbjct 12106 TGACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCTCCAGATCA 12165 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || |||||||| || || | || ||||| || ||||| Sbjct 12166 GCAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTACAA 12225 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || || ||||| || Sbjct 12226 TATCCAGAAGGAGTCCACACTTCACTTAGTGCTTCG 12261 >seq8056 Length=34938 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || || || ||||| | || || ||| || | Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | ||||| | |||||||| |||||||| | || ||| Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 32022 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| || ||||| | || || | |||||||| ||| ||||| Sbjct 32023 CAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAAT 32082 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| || ||||||||||| ||| | |||| ||| Sbjct 32083 ATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGGC 32130 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || |||||| | || ||||| || | Sbjct 32131 ATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTCA 32190 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | || | ||||| | || || || || || ||| | || || Sbjct 32191 GATACTATTGAAAACG-TCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCA 32249 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| ||||| |||||||| || | || |||||| ||||||||| Sbjct 32250 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAA 32309 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || ||| | || || ||| | || ||||| | |||| || Sbjct 32310 CATTCAGAAAGAATCTACCCTTCATCTTGTATTGCGTCTCCGAGGAGG 32357 >seq8521 Length=40141 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || |||||| |||| || ||| || || Sbjct 2475 ATGCAGATCTTCGTCAAGACTCTGACTGGGAAGACAATCACCCTCGAGGTTGAGCCCTCC 2534 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| || || |||||| | || || Sbjct 2535 GACACCATAGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 2594 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || |||||||| || | || ||||| ||||||||| Sbjct 2595 CAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTTTCTGACTACAAC 2654 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || ||| | || || ||| || | || || Sbjct 2655 ATCCAGAAAGAGTCTACACTCCATCTCGTCCTTCGTCTGCGTGGTGG 2701 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || || || ||||||||| | || || ||| || | Sbjct 2703 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACCATCACCCTAGAGGTTGAGCCCTCA 2762 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| || || || || || ||| | || || Sbjct 2763 GACACAATTGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 2822 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || || |||| || | || ||||| |||||||||| Sbjct 2823 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCCGACTACAAC 2882 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || |||| || || ||||| || ||| || | || || Sbjct 2883 ATCCAAAAAGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 2929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499742438818560