Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq828 163 3e-35 seq785 132 5e-26 seq35 125 8e-24 >seq828 Length=218660 Score = 163 bits (180), Expect = 3e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 ||||||||||| ||||| | ||||| ||||| |||| || ||||| || |||||| Sbjct 42316 GTGGAAGGTGGTCAGCACCTGAACGTTAACGTACTGCGTCGTGAAACACTGGAAGATGCG 42257 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 ||| |||||||||| |||||||||||| | || || ||||| ||||| ||||| || ||| Sbjct 42256 GTTAAACATCCTGAGAAATACCCACAGCTGACTATTCGTGTGTCTGGCTATGCGGTACGT 42197 Query 51338 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51397 || ||||||||||| |||||||||| || ||||| || |||| || || || || || Sbjct 42196 TTCAACTCACTGACTGCTGAACAGCAGCGTGACGTGATTACCCGTACTTTCACTGAAAGC 42137 Query 51398 CTATAATGGC 51407 || |||| || Sbjct 42136 CTGTAATCGC 42127 >seq785 Length=396209 Score = 132 bits (146), Expect = 5e-26 Identities = 712/1116 (64%), Gaps = 59/1116 (5%) Strand=Plus/Minus Query 153492 GATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACG 153551 || || |||||||| |||||||| || || || | || || || || || |||||| Sbjct 142691 GACGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACG 142632 Query 153552 CCTTTTGTCACGATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAG 153608 || |||||||| || ||| || | || || ||| ||| ||| |||||||| Sbjct 142631 CCGTTTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGG---GAATCGCGCCTGATCCAG 142575 Query 153609 AAAGCAATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACTCCTGTATTC 153668 || |||||||| ||||| ||| |||||||| ||||| ||| || |||||||| Sbjct 142574 CAATCAATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTC 142515 Query 153669 CCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAAC 153725 |||||||||| ||||| || | || | || | ||| | | ||| ||| Sbjct 142514 CCAAAACTGG---TGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAAC 142458 Query 153726 TATGATATTAAGAAATTGGCCCTGGAATGTTCTTCAAAGCGTATGTATCCGGATAT---- 153781 || || || ||| || |||| |||||||| | ||||||||||| ||||| || Sbjct 142457 TACGACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTC 142398 Query 153782 TATTA-GCGCGGCTAATAACCGTCGTATTACTGGCTCTAGCATTCCTGTATCTCCTATGG 153840 |||| | | | | | | ||| || || | | ||| | | || |||| Sbjct 142397 AATTATGATCAGGTGGTGAAAGTC-----ACAGGTT----CGTTC--AAAACGCCGATGG 142349 Query 153841 GTTGTCGTAGTTTCCTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGAC 153900 | || || |||||||| |||||| |||| || | || | || | || || | Sbjct 142348 GCTGCCGCAGTTTCCTGGGCGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCC 142292 Query 153901 GTAATAACCTGGGCGTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCAC 153960 | ||||| | ||||| | | | || || || ||||||||| | |||| |||| | | Sbjct 142291 GCAATAATATCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAG-CGAACCGC 142233 Query 153961 AGGAAGATGAAGACGCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGT 154020 || |||| || || || ||| | || || || ||| || ||| Sbjct 142232 -----GACGAAG-CG--------GCGTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTG- 142188 Query 154021 GCTTTG-AAGCCCTGATGACTCGTATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCC 154079 || | |||| |||||||| || || | | || || | |||||| | || || Sbjct 142187 GCGAAGAAAGCGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCG 142128 Query 154080 CCGATCCTTTATACAGAAGGTGCGTTTGGTGTAAGGTTGAAACCCGATGATGA-AATTCT 154138 || ||||| || | |||||||||| ||||| | ||||| | || || || | ||| Sbjct 142127 CCAATCCTGTACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCC 142068 Query 154139 GGAACTGTTCAAAAATGGACGCAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 154198 || | | ||||||||||| || || || || |||||||| || |||||||||| Sbjct 142067 GGCA-TCTTCAAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAAAC 142009 Query 154199 TCTGA---TGCTTTTCGG-ATCTGGACAACACCCATTCGAC-CGGATCGGTTCTAAGAAC 154253 | | ||| ||||| | | ||| ||| |||||| | | | ||| ||| Sbjct 142008 CATTAACGCGCTGTTCGGCAACCAGAC-CCACGTGTTCGACGCCGGCCAGTTACGCGAAA 141950 Query 154254 ATGGGTAGACTGATTCTGGAATATCTACGCGCTGCGACCGAAGCATGGAAAAAGAAAACC 154313 | | || | |||| ||| ||| || || |||||| |||||| | |||| Sbjct 141949 AAGCCGAGGC-GATTGTGGCTCGTCTGAAAGCGGCAACCGAAAGCTGGAAAGACGAAACG 141891 Query 154314 GGATTTGGGTTTAGTCTGTACTCAACCCCTGCTGAATCTCTATGTCATCGTTTCTGCAAA 154373 || | || || || |||||| || || ||| || || | || ||||| Sbjct 141890 GGCTACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGCGACCGCTTCTGTCGT 141831 Query 154374 CTGGACTATGAGAAATTCGGAAGTATCAAAGGGATCACAGATAAAGGCTGGTACACTAAC 154433 ||||| | | ||||||| | || | || |||||||| | ||||| ||| Sbjct 141830 CTGGATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAAGGTTACTACACCAAC 141771 Query 154434 AGTTTTCATCTGGACGTTGACCGCAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCC 154493 || || ||||||||||| || ||||||| |||| ||| ||| |||||| ||||| Sbjct 141770 AGCTTCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAACTCGACTTCGAAGCG 141711 Query 154494 GATTAT-CATTACATTGCAACTGCTGGACATATCAGCTATGTAGAATTCCCTGATATGAA 154552 ||| | || ||||| || || ||| |||||| |||| |||| | || | Sbjct 141710 CCGTATCCGCCACTCAGCAACGGC-GGTTTCATCTGCTATGGCGAATACCCTAACCTGCA 141652 Query 154553 AAACAACCTGGAAGCCCTTGAAAAAGTCTGGGATTA 154588 | |||| ||| |||| || ||| | || |||||||| Sbjct 141651 ACACAATCTGAAAGCGCTGGAAGACGTGTGGGATTA 141616 >seq35 Length=455554 Score = 125 bits (138), Expect = 8e-24 Identities = 203/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 39960 GACCAGATAGCAAAAGTCATTGAACAACTGAAATCAACCCCAGACGATCGCG--GGATCA 40017 |||||| | ||||| || ||||||| ||||| | ||| ||| ||||| | || | Sbjct 112455 GACCAGCTGGCAAATGTGGTTGAACAGCTGAAGAAAGACCCTGAC--TCGCGTCGTATTA 112512 Query 40018 TCGTTTCTGCCTGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTT 40077 |||| ||||| |||||| | || || ||| | ||||| || || || ||| || Sbjct 112513 TCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCACGCTT 112572 Query 40078 TCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTG 40137 |||| |||||| ||| | |||||||| |||| ||| ||| ||||| ||| | Sbjct 112573 TCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCATGCG 112632 Query 40138 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCG 40197 || ||||| | || |||||||||||||||||| ||| || || ||| |||||| || | Sbjct 112633 ATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATGATGG 112692 Query 40198 CTGATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGAT 40247 | | |||| |||||||| ||| | || ||||| ||||| ||| Sbjct 112693 CGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557587025029440