Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq785 251 8e-62 seq828 183 3e-41 seq35 122 1e-22 seq9405 98.7 1e-15 >seq785 Length=396209 Score = 251 bits (278), Expect = 8e-62 Identities = 1027/1592 (65%), Gaps = 79/1592 (5%) Strand=Plus/Minus Query 154800 CAACGAGAACGCAAACAAAGAC-GCACGGGTATTCCCTACACAGCGTGATTTGCTGGCGG 154858 ||||||||| || ||||||||| ||| | || ||| || |||||||| ||||||||| Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAGTGAT-CCCGACCCAGCGTGACCTGCTGGCGG 143096 Query 154859 GTATTGTAGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGC 154918 ||||||| || ||||||| |||| | ||||| | ||| || |||| |||| Sbjct 143095 GTATTGTCGCCAAGCATTACGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCGC 143036 Query 154919 ATGACTCCGGCGACATCCATTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTA 154978 |||| ||||| ||||||||||| || || || ||| ||||||| ||| || Sbjct 143035 ATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTA 142976 Query 154979 ACTGCTGTCTGGTTGACCTGAAAGGTATGCTTGAGAACGGTTTCAAGATGGGTAACGCGG 155038 ||||| ||| | ||||| ||||| ||| | | |||||||||| |||||||| |||| Sbjct 142975 ACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCGG 142916 Query 155039 ACATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCAC 155098 | ||||| |||| || || || || || || ||| |||||||| | ||| | Sbjct 142915 AAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCGC 142856 Query 155099 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCGAACGTTGATAAAGTGCTGGCTC 155158 || | ||| || |||||||| || ||| || | | || |||| ||||| | Sbjct 142855 AGGTCGCCAGCCATATTTACGGCGGCACGACCATTAACCGCATCGACGAAGTACTGGCGC 142796 Query 155159 CATACGTAGAAATGACA--TTCTTCAAACATCTGCGCGATGCTGAACATTATGGTATCGA 155216 | | ||| | | || ||| ||||||| | ||| ||| | ||| | || Sbjct 142795 CGTTCGT--CACCGCCAGCTTCAATAAACATCGTCAGACTGCCGAAGA--GTGGCA--GA 142742 Query 155217 ACACTATAACGATTATGTGTATGCAATCGAGAAG-ACCGAAAAAGA-TGTATTCGATGCG 155274 | | | ||| | ||| | || | ||||||||||| ||| | || || Sbjct 142741 TTGC--AGATGCGGATGGCTTTGCTCAC-AGCCGTACCGAAAAAGAGTGT-TATGACGCC 142686 Query 155275 TTCCAGTCCTATGAGTATGAAGTGAATACCCTGCATACTGCCAACGGGCAAACCCCGTTT 155334 |||||||| || ||||| || ||||| ||||| || |||||||| || || |||||| Sbjct 142685 TTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCCGTTT 142626 Query 155335 GTTACCATCACTTTCGGTACTGGTACAAGCGACTATGAA---CGCATGATCCAGAAAGCG 155391 || ||| || ||| || || ||| || ||| ||| |||||||| || | Sbjct 142625 GTCACCTTCGGTTTTGGCCTCGGCACA---TCCTGGGAATCGCGCCTGATCCAGCAATCA 142569 Query 155392 ATTCTGAAAAATCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCTAAA 155451 |||||| || || ||| ||| ||||| ||| | | | || | |||||||| ||| Sbjct 142568 ATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCCAAAA 142509 Query 155452 CTGGTTATGTTCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCAGAACTATGACATC 155511 ||||| | ||| | || | || | | | | | || ||||| |||||| Sbjct 142508 CTGGTGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAACTACGACATC 142449 Query 155512 AAACAACTTGCCCTTGAATGTGCTTCGAAACGCATGTACCCAGATATC----ATTA-GTT 155566 || ||||| || || ||||| || || || |||||||| || ||| |||| | | Sbjct 142448 AAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAATTATGAT 142389 Query 155567 CAGCTAATAACCGCGCTATTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCA 155626 ||| | | | | | || |||| ||||| | | || ||||| || |||| Sbjct 142388 CAGGTGGTGAAAG-----TCACAGGTT----CGTTC--AAAACGCCGATGGGCTGCCGCA 142340 Query 155627 GTTTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAATC 155686 ||||||| |||||| |||| || || || | || | || || || |||||| Sbjct 142339 GTTTCCTGGGCGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCCGCAATAATA 142283 Query 155687 TGGGTGTGGTGACAATCAACCTCCCACGTATTGCGATCGAAGCCGAAGCACAGGAAGAAG 155746 | || ||| | | | || || || ||||||||| | |||| |||| | | || |||| Sbjct 142282 TCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAG-CGAACCGC--GACGAAG 142226 Query 155747 AAGACGCACACGATGCATTTTGGCGTATCCTTGATGAACGTCTGGATCTTTGTTACGATG 155806 || || || ||| | || || || ||| || || | | | Sbjct 142225 ----CG--------GCGTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTGGCGAAGAAAG 142178 Query 155807 CTCTGATGACTCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTGT 155866 | |||||||| || || | | | || || | |||||| | || || || ||||||| Sbjct 142177 CGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCGCCAATCCTGT 142118 Query 155867 ACACAGAAGGTGCGTTTGGTGTACGCCTGAAACCGGATGATGA-AATTCTGGAACTGTTC 155925 ||| |||||||||| ||||| ||||||||| | || || || | ||| || | | ||| Sbjct 142117 ACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCCGGCA-TCTTC 142059 Query 155926 AAAAATGGGCGTAGTTCTATCAGTCTGGGCTATATCGGGCTGCATGAAACGCTGTTGATG 155985 |||||||| ||| || || || || || || || |||||||||| | Sbjct 142058 AAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAAACCAT------- 142006 Query 155986 TTTGGCTCCGGTCAACATCCATTCGATCGCGTT----GGCTCCCAGAACTTCGGTAAACA 156041 | || | | || || ||| | || ||| | | |||| || ||| Sbjct 142005 TAACGCGCTGTTCGGCAACCAGACCCACGTGTTCGACGCCGGCCAGTTACGCGAAAAAGC 141946 Query 156042 CG------TTCTGGAACACCTGAAAAACAAAACTGAACGCTGGAAAGCCGAAACTGGGTA 156095 || || ||| | |||||| ||| ||| ||||||||| |||||| || || Sbjct 141945 CGAGGCGATTGTGGCTCGTCTGAAAGCGGCAACCGAAAGCTGGAAAGACGAAACGGGCTA 141886 Query 156096 TGGATTCAGTCTGTA-TTCAACCCCAGCGGAATCTCTCTGCCATCGCTTCTGTAAGCTGG 156154 || ||||| ||||| || || |||| || | || ||| | ||||||||| |||| Sbjct 141885 CGGTTTCAGCCTGTACAGCACGCCGAGCGAAAAC-CTGTGCGACCGCTTCTGTCGTCTGG 141827 Query 156155 ACTTTGAGAAGTTCGGAAGCATCAAAGGGGTCACGGATAAAGGCTGGTATACAAACAGTT 156214 | | | ||||| | || || || |||||||| | || || ||||| | Sbjct 141826 ATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAAGGTTACTACACCAACAGCT 141767 Query 156215 TCCATCTGGACGTTGACCGCAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCCGATT 156274 ||||||||||||| || ||||||| |||| ||| ||| |||||| ||||| | Sbjct 141766 TCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAACTCGACTTCGAAGCGCCGT 141707 Query 156275 AT-CATTACATCGCTACTGCTGGTCATATCAGTTATGTTGAATTCCCTGATATGAAAAAC 156333 || | || || || || ||| ||| | |||| |||| |||| | || || || Sbjct 141706 ATCCGCCACTCAGCAACGGC-GGTTTCATCTGCTATGGCGAATACCCTAACCTGCAACAC 141648 Query 156334 AACCTGCAAGCCCTGGAAAAAGTCTGGGATTA 156365 || ||| |||| |||||| | || |||||||| Sbjct 141647 AATCTGAAAGCGCTGGAAGACGTGTGGGATTA 141616 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 49780 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCGA 49839 ||||||||||||| | ||||||||||| | ||||||||||||| ||| |||||||| | Sbjct 187972 CGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAA 187913 Query 49840 ATCCAGCAGGGGCCACCAAAT 49860 ||||||| |||||||||||| Sbjct 187912 GTCCAGCAAGGGCCACCAAAT 187892 >seq828 Length=218660 Score = 183 bits (202), Expect = 3e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 51268 CGTGAAGTCGATATTGAATTTCAACCCACTGTTAAAGTGGAAGGTGGACAACACTTAAAC 51327 |||||||| || ||| |||| || || || ||||||||||| || ||| | ||| Sbjct 42352 CGTGAAGTGCCAATGGAAGTTCAGCCGACCGTGCGCGTGGAAGGTGGTCAGCACCTGAAC 42293 Query 51328 GTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCTGTGAAGCATCCAGAAAAATACCCA 51387 || ||||| |||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 42292 GTTAACGTACTGCGTCGTGAAACACTGGAAGATGCGGTTAAACATCCTGAGAAATACCCA 42233 Query 51388 CAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTCAATTCACTGACTCCTGAACAA 51447 ||| | || || |||||||| |||||||| || |||||||| ||||||||| ||||||| Sbjct 42232 CAGCTGACTATTCGTGTGTCTGGCTATGCGGTACGTTTCAACTCACTGACTGCTGAACAG 42173 Query 51448 CAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGTCTATAATGGC 51493 ||||| ||||| || |||| || || || || || || |||| || Sbjct 42172 CAGCGTGACGTGATTACCCGTACTTTCACTGAAAGCCTGTAATCGC 42127 >seq35 Length=455554 Score = 122 bits (134), Expect = 1e-22 Identities = 185/260 (71%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 40036 AAGAAAAACCA-GACGATCGCG--GGATCATCGTTTCCGCCTGGAACCCTGTTGATCTTG 40092 |||||| ||| ||| ||||| | || ||||| || || |||||| | || || | Sbjct 112485 AAGAAAGACCCTGAC--TCGCGTCGTATTATCGTGTCTGCATGGAACGTGGGCGAACTGG 112542 Query 40093 ATGATATGGCTTTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAAC 40152 || | ||||| || || || ||| ||||||||||||| || | |||||||| Sbjct 112543 ATAAGATGGCGCTGGCACCTTGCCACGCTTTCTTCCAGTTCTATGTGGCCGACGGTAAAT 112602 Query 40153 TGTCTCTACAGTGGTATCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCG 40212 |||| ||| ||| ||||| ||| ||| ||||| | || |||||||||||||||| Sbjct 112603 TGTCCTGCCAGCTGTACCAGCGCTCATGCGATATCTTCCTCGGCTTGCCGTTCAATATCG 112662 Query 40213 CCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTATGAAGTGGGTGATC 40272 || |||||| || ||| |||||| || || | |||| ||||||||||||| Sbjct 112663 CCAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCTTGAAGTGGGTGATT 112722 Query 40273 TGGTTTGGACTGGTGGCGAT 40292 | || ||||| ||||||||| Sbjct 112723 TTGTCTGGACGGGTGGCGAT 112742 >seq9405 Length=40329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 272/412 (66%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 42328 ATCAAAAAACATGGCTTGCGTAACTCAACACTTTCTGCTTTAATGCCTTGTGAAAGTAGC 42387 ||||||| || ||| |||||||||| || || ||||| | ||||| | || | Sbjct 35094 ATCAAAACGCACGGCCTGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCCGAGACCTCT 35153 Query 42388 TCACAGGTGAGTAACTCAACCAACGGGATCGAACCTCCACGCGGCCCTGTGAGTGTGAAA 42447 || ||| | ||| | |||||||| ||||| || || ||||||| | | ||| | ||| Sbjct 35154 TCGCAGATCTCCAACGCTACCAACGGTATCGAGCCACCGCGCGGCCATATCAGTATTAAA 35213 Query 42448 TCTTCTAAGGAAGGT-TCATTCAATCAGGTAGTACCGAACCAGAATAATCAGATTGACTT 42506 | || || || || || | | |||||| || ||| | | | || || || Sbjct 35214 GCGTCGAAAGACGGGATCCTGCG-TCAGGTCGTGCCGGAGTATGAGCGTCTGAAAGATCA 35272 Query 42507 CTATGATTATCTCTGGACAATGGCAAAACGCGGAAATAAAGGTTATCTGGCTCACGTAGC 42566 || || || ||| ||| | || || | || |||||| | || | Sbjct 35273 GTACGAACTGCTGTGGGATATGCCGAACAACG------ACGGCTATCTGCAACTGGTTGG 35326 Query 42567 GGTTATGCAGAAGTTTGTTGATCAGGCTATCTCTGCAAACACCAACTATGATCCGGCTAA 42626 || |||||||| || | |||||||| || || | |||||||||||||| ||| | Sbjct 35327 CGTGATGCAGAAATTCATCGATCAGGCGATTTCGTCCAACACCAACTATGACCCGTCGCG 35386 Query 42627 CTTCCCAGATGGTAAAGTGAAATCTGAAATCATCCTTGAA-GATCTGCTGTATGCAAACT 42685 |||||| | |||||||| ||||| | ||||| || ||||| || || Sbjct 35387 CTTCCCGAACAGTAAAGTGCCGA-TGAAACAGTTGTTGAAAGACTTGCTGACAGCCTACA 35445 Query 42686 ATTTCGGCATCAAAACGCTGTACTACCACAACACCCGCGACGGTGCAGGTGA 42737 | || ||| ||||||||||||| || || ||||||||||||||||| | ||| Sbjct 35446 AATTTGGCGTCAAAACGCTGTATTATCAGAACACCCGCGACGGTGCTGATGA 35497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565106949126720