Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq742 179 5e-40 >seq742 Length=196864 Score = 179 bits (198), Expect = 5e-40 Identities = 1106/1745 (63%), Gaps = 49/1745 (3%) Strand=Plus/Plus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || || ||||| ||||| |||| | |||||||||| |||||||| |||||| Sbjct 47156 GAAAGACCGCAACACATGCTCATGAGGGTATCTGTCGGTATCCACGGGGAAGACATTGAT 47215 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAAC 111724 || | | || || ||| || |||| | | || |||| ||||| | || || Sbjct 47216 TCAGCCATTGAAACTTACAACCTTCTGTCA-GAGAAATACTTCACTCACGCCAGCCCTAC 47274 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 || ||| ||| | || || | || || |||| ||| ||||| | || | | Sbjct 47275 TCTATTCTCCGCAGCCACGCCCCGTCCTCAGCTGTCTTCTTGCTTCCTACTGGCCATGAG 47334 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 || ||| || | || || |||| ||| || | | ||||||| | || |||| Sbjct 47335 CGATGATAGTATTGAAGGGATCTACGACACCCTGAAGCAGTGTGCCCTGGTTTCCAAGTC 47394 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 ||||| |||||||| | || | || || ||||||| || || || Sbjct 47395 TGCTGGAGGTATCGGCCTTCATGTACACTGCATCCGAGCCAAGGGTTCCTACATCGCGGG 47454 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 ||| || || || |||| | | || ||||| || || | || ||| || || Sbjct 47455 TACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCGTGTGTACAATAACACGGCCCG 47514 Query 111965 CTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCC 112018 ||||||| |||| | || |||| ||| || |||| | || ||||||| Sbjct 47515 CTATGTAGACCAGGGAGGAAA---CAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGCC 47571 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGC 112078 ||||||||||| || | || ||| | || ||| || || | ||||| | Sbjct 47572 GTGGCACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAGT 47631 Query 112079 GCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 | |||| || || | |||| || | ||||| || ||||| ||||||||| | || | Sbjct 47632 TC-GTGCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCG 47690 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCC 112196 || | | ||||| |||| | || || || | || ||||| | ||| ||| Sbjct 47691 AGAGCAACGAGGATTGGAGTCTCATGTGCCCCCACGATGCTCCCGGCTTACACGAGTGCT 47750 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG 112256 | ||| || || ||||| || || |||||| ||||| | ||| |||| | | | Sbjct 47751 G-GGGAGAAGAATTTGAGGCTCTGTACACACGCTACGAAGCCGAAGGTCGTTCTAAGAAG 47809 Query 112257 ACGGTGCCAGCTGCCGA-TGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | | | | || || || | |||||| || || || | |||||| || || || || Sbjct 47810 AAGAT-CAAGGCGCAGACTTTGTGGATGGCCATCATCGAATCTCAAGTAGAAACGGGAAC 47868 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || || ||||| ||||| ||||| || |||| |||||| || ||| | ||| |||| Sbjct 47869 CCCCTACATGCTGTACAAGGACGCGTGCAACCGAAAGAGCAACCAACAAAATCTGGGAAC 47928 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 || ||| | |||||||| |||||||| | |||| || ||||||||| || Sbjct 47929 TATTAAGTGCAGTAACCTCTGCACAGAAATAGTTGAATACACTTCCAAAGATGAAGTAGC 47988 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 112495 ||| || || | || || |||||| || | ||||| | ||| | ||| ||| Sbjct 47989 TGTCTGCAATTTGGCCTCTATCGCTGTC----AATATGT--TTGTAGATAATAAGGTATT 48042 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 || | |||||| || | || || || |||||||| ||||| | |||| | |||| Sbjct 48043 CGACTTTGAAAAGCTGAAGATCGTAACCAAGACTGTCACTAAAAATTTGAACAAAATTAT 48102 Query 112556 TGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 || || |||||||| || ||| ||| | | ||| || ||| | ||||| || | Sbjct 48103 CGACGTTAACTTTTACCCTGTACCAGA-AGCTAGAACATCGAACATGCGTCACCGCCCCA 48161 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTT--TG---TCGCCACGCATT 112669 | ||| | || | ||||| || || |||| || |||| || | || | || Sbjct 48162 TCGGTATTGGAATACAAGGCCTGGCAGATG-CTTTTGTCTTAATGAGATTGC----CTTT 48216 Query 112670 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 ||| || |||| || | ||| | |||||||||||| ||||| ||| || Sbjct 48217 TGAGAGTGAAAAAGCCCAGCTTCTGAATCAACAAATATTTGAGACATTGTATTACGGTGC 48276 Query 112730 TCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 ||| || || |||| ||| |||| ||| || ||| |||| || || | || | Sbjct 48277 TCTGGAAGCAAGTTGCGAGCTGGCCGAGAAGGAGGGTACATACGAGACGTACCCAGGATG 48336 Query 112790 TCCAG-CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGCTTCAC 112847 ||| | | || ||||| | ||||||| ||| |||||||| || | | || || Sbjct 48337 TCCTGTCAGCA-AAGGGATTCTTCAATATGAGATGTGGGACAAGAAGCCTACAGATT-TG 48394 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 | |||||| || | || | ||| | | || | | ||| || | Sbjct 48395 TGGAACTGGGCTGCCTTGAAAGCTAAGATCGCGATACACGGAGTCAGGAACTCGCTGCTT 48454 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | ||||| ||||| || ||||||||||| || || || || || || |||| ||||||| Sbjct 48455 CTCGCACCCATGCCTACCGCCTCCACCGCCCAGATTTTAGGAAACAACGAATCCTTTGAA 48514 Query 112968 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 |||| ||| | |||||||| ||||| | | | ||||| || | |||| || Sbjct 48515 CCCTTCACTTCCAACATCTACACCAGAAGGGTCTTGTCTGGAGAATTCCAGGTTGTGAAT 48574 Query 113028 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 113087 | ||||| || ||| | | ||| || | | ||| | | || ||||| ||||| Sbjct 48575 CACCATCTACTGCGTGATTTGACCGAGGCTGATTTGTGGGACGACGACATGAAAAATCTC 48634 Query 113088 AT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAA 113146 || || | | || ||||||||||| | | || || | | || | | Sbjct 48635 ATCATTGCCAAC-AACGGATCCATTCAAAACCTGGACAGAATACCCAAGCACATCAGAGA 48693 Query 113147 GTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGA 113203 | ||| |||||||||||||| ||| | || | | || | ||||| || || Sbjct 48694 TCTCTACAAGACAGTTTGGGAAATTTCCAACA--AAATA-CTGATCAAGATGGCAGCCGA 48750 Query 113204 TCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG-AAAGTCCAACGA 113262 || || ||| ||||| |||||||| | || || | ||| | || ||||| | Sbjct 48751 CCGAGGAGCCTTTATTGACCAAAGTCAGTCCTTCAACATACACGTGGCAGAGCCCAACTA 48810 Query 113263 TGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 113322 | |||||| ||||||| ||| | || | ||||||| ||| | || || || |||| Sbjct 48811 CG-GAAAGCTCACTTCTATCCACTTCTATGGCTGGAAGATGGGCTTGAAGACTGGAATGT 48869 Query 113323 ATTAC 113327 ||||| Sbjct 48870 ATTAC 48874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620208297720480