Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq785 107 2e-18 seq6691 87.8 2e-12 >seq785 Length=396209 Score = 107 bits (118), Expect = 2e-18 Identities = 257/383 (67%), Gaps = 8/383 (2%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || ||| ||||||||||| || || || | || ||||||| || |||||| Sbjct 105808 AACCTGACGGTCGAAACGACCCGGACGCAGCAATGCCGGGTCAAGAACGTCAGGACGGTT 105749 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 || || ||||| || | || || | | ||||| || |||||||| | | Sbjct 105748 AGTTGCTGCAATTACGATGATACCTTCGTTACCTTCGAAGCCATCCATTTCAACCAACAT 105689 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC---ACCTGCCGAACGCTT 11672 |||||| | ||||||||||| ||||||| || || ||| |||||| ||||| Sbjct 105688 CTGGTTCAGTGTCTGTTCACGTTCATCGT--GACCGCC-ACCTAAACCTGCACCACGCTG 105632 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTT-GGTTGGCACGTGCCT 11731 || || ||||| ||||||||||| || | |||||| || || | | |||| Sbjct 105631 ACGGCCAACGGCGTCGATCTCATCGATAAAGATGATACATGGAGCGGCTTTCTTC-GCCT 105573 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 ||||||| | ||||| ||||| || || ||||| |||||||| || ||||||| | Sbjct 105572 GTTCGAACATGTCACGCACACGAGATGCACCGACACCCACGAACATTTCTACGAAGTCAG 105513 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | ||| | || ||| || || || | || || || |||||| || || | | Sbjct 105512 AACCGGAAATCGTAAAGAATGGCACTTTGGCTTCGCCGGCAATGGCTTTCGCCAGCAAGG 105453 Query 11852 TCTTACCCGTACCAGGTGCACCA 11874 | ||||| ||||| || | |||| Sbjct 105452 TTTTACCGGTACCCGGAGGACCA 105430 >seq6691 Length=42033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||| | ||| || |||||| | || Sbjct 14212 GGCAAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCC 14271 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||||||||||| |||||| || || |||||||| Sbjct 14272 GGGCATGAGGCCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGAT 14331 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA--AGGTCGAGAC-TTGTCGAA 119671 || || || || ||||| || | | |||||| | || || || | | || ||| Sbjct 14332 TCCTTCTACGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGAT 14391 Query 119672 CCACTTGAGAGCCCAGTTGGCCTT 119695 ||||| || ||||||| ||||| Sbjct 14392 CCACTGCAGGGCCCAGTCTGCCTT 14415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588469230325200