Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq742 147 3e-30 seq6691 109 6e-19 seq22220 93.3 5e-14 >seq742 Length=196864 Score = 147 bits (162), Expect = 3e-30 Identities = 890/1401 (64%), Gaps = 41/1401 (3%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||| ||||||||||| |||| || || || || || || ||||||||| Sbjct 48534 TAGATGTTGGAAGTGAAGGGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAG 48475 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| ||||| | | || ||| | | || | | | ||| | Sbjct 48474 GCGGTAGGCATGGGTGCGAGAAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCT 48415 Query 106055 TTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 || | || |||||| | | | | | || ||| | ||||||| ||| |||||| Sbjct 48414 TTCAAGGCAGCCCAGTTCCACAAATCTG-TAGGCTTCTTGT-CCCACATCTCATATTGAA 48357 Query 106113 GCACCCCTTGG--GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 | | ||||| | ||| ||| | || | ||||| || | ||| | || || Sbjct 48356 GAATCCCTTTGCTGACA--GGACATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGC 48299 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 || || || || || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 48298 CAGCTCGCAACTTGCTTCCAGAGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAG 48239 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290 || ||||| || ||||| | | | || | ||| |||| || || || Sbjct 48238 AAGCTGGGCTTTTTCACTCTCAAAAGGCAATCTCATTAAGACAAAAGCATCTGCCAGGCC 48179 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGG 106349 ||| | || | ||| || || | ||| ||||| || || ||| || ||| || | Sbjct 48178 TTGTATTCCAATACCGATGGGGCGGTGACGCATGTTCGATGTTCTAGCT-TCTGGTACAG 48120 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT---GAT-T 106405 | ||||| || ||| || | | ||| | |||||| || ||| |||| || ||| | Sbjct 48119 GGTAAAAGTTAACGTCGATAATTTTGTTCAAATTTTTAGTGACAGTCTTGGTTACGATCT 48060 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 ||| | |||||| | || || | | ||| || ||||| ||| || || Sbjct 48059 TCA----GCTTTTCAAAGTCGAATACCTTATTATCTACAA--ACATA--TTGACAG--CG 48010 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || || ||||||||||| ||||| ||||| || ||||| || | |||||||| Sbjct 48009 ATAGAGGCCAAATTGCAGACAGCTACTTCATCTTTGGAAGTGTATTCAACTATTTCTGTG 47950 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 || | ||| | |||||| || |||| ||| | |||||| |||||| ||||||||| Sbjct 47949 CAGAGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCG 47890 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC 106645 |||||||| ||||||||||| || ||||| || || || | || || ||| ||||| Sbjct 47889 TCCTTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCAC 47830 Query 106646 ACA-TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 106704 | | || ||| || | | | || | || || || || ||||| |||||| || Sbjct 47829 AAAGTCTGCGCCTTG-ATCTTCTTCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAG 47771 Query 106705 GGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 || ||||| || || ||| | || ||| | || || || | || || || | | Sbjct 47770 AGCCTCAAATTCTTCTCCC-CAGCACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGA 47712 Query 106764 GAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 || ||| | || | | ||| || ||||||||||| || || || ||||||| | Sbjct 47711 GACTCCAAT--CCTCGTTGCTCTCGACACGCTTCATGAACAGATCGGGGATCCACAAGCC 47654 Query 106822 TGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 106880 | || | || | | || ||| | || || | || || | || || | || Sbjct 47653 GTAGAATAAGTCACGTGCA-CGAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGA 47595 Query 106881 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC----CCTTTCGA 106936 | || | || ||||||||||| ||||||| || | |||| || || ||| | | Sbjct 47594 ATTCAAATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTG- 47536 Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 || | || | ||||||||| || ||| || | || || ||||| || | | Sbjct 47535 TTTCCTCCCTGGTCTACATAGCGGGCCGTGTTATTGTACACACGCAGCATGGGGACCAAC 47476 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 107056 |||| || || || || ||| || || ||||||| | || | Sbjct 47475 CCATTGGAGACTCCGTTAGTACCCGCGATGTAGGAACCCTTGGCTCGGATGCAGTGTACA 47416 Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 107116 || | || ||||| ||||| |||| || | | ||||||| | | || || | ||| Sbjct 47415 TGAAGGCCGATACCTCCAGCAGACTTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAG 47356 Query 107117 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 107176 || || | || || || | |||| | ||||||||| |||| ||| || | Sbjct 47355 ATCCCTTCAATACTATCATCGCTCATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGG 47296 Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTT 107235 || || | || ||| || || || | |||||| |||| || | | |||| Sbjct 47295 GGCGTGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAAGTATTTC-TCTGACAGAAG 47237 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || ||| || || | | | ||||||||||||||||||||||| |||| | || | ||| Sbjct 47236 GTTGTAAGTTTCAATGGCTGAATCAATGTCTTCCCCGTGGATACCGACAGATACCCTCAT 47177 Query 107296 AAACATGTATTGGGGTGTTTC 107316 | ||||| ||| ||| |||| Sbjct 47176 GAGCATGTGTTGCGGTCTTTC 47156 >seq6691 Length=42033 Score = 109 bits (120), Expect = 6e-19 Identities = 339/513 (66%), Gaps = 10/513 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || |||||||| |||||| |||||||||||||| || || ||| || | ||||| Sbjct 13925 TATTCCCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCATGTCCATG 13984 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 117104 ||| || || ||||| | | | | || |||||| || | | | ||| || Sbjct 13985 AAGCTGAAGGGGTTCTTGGA-TCCGTAGTGCTTGGCACAGCCCAGGTCCACCAAGAGCCG 14043 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | |||| | ||||| |||| |||||| || ||||||| || | || | Sbjct 14044 GTCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGAC 14103 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || ||||| || ||| ||| ||||| || || || || ||||| || | Sbjct 14104 GGGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAG 14163 Query 117225 GATAGTTTCGGTAGTGGGTCTAT-TACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCC 117282 || | ||| ||||| | | ||| | || ||||| | | || |||||| || Sbjct 14164 GACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGT-TTGAACATGAGGCA-GGCAAAGTCG 14221 Query 117283 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGA 117342 |||||||||||| |||||||| || | || || |||| | ||| |||||||| Sbjct 14222 CAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGG 14281 Query 117343 CCCCGCTTCTTCAACCAATAAATAG-CGCAGAA-TGACCCGGAGAAGAAGATACCCTCCA 117400 || |||||||||| |||| | || | ||| || || |||||||||||||| || || | Sbjct 14282 CCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTG--CCGGAGAAGAAGATTCCTTCTA 14339 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCA 117460 | || || || || | | ||||| |||||| | | | || | | ||| | || Sbjct 14340 CGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCA 14399 Query 117461 TTGCCCATTTCGCCTTCTTCTCAATACATGGTA 117493 ||||| | |||||||||| | ||| |||| Sbjct 14400 GGGCCCAGTCTGCCTTCTTCTTCACACACGGTA 14432 >seq22220 Length=17734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 273/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 9186 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9245 |||| | ||| || ||||| ||||| | ||| || | ||| || ||||| || | || Sbjct 1916 ATCTGTCTATCGAAACGACCGGGACGCAAGAGAGCTTTATCTAGAATATCTACTCTGTTG 1857 Query 9246 GTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9305 || ||||| | |||||| | ||| | | ||| || |||||||| | ||| Sbjct 1856 GTAGCGGCAAGGACAACCACGTTTGTGGTGGTGTTAAAGCCGTCCATCTCAACAAGCAGT 1797 Query 9306 TGGTTAATAGTTTGTTCCCGTTCATCAT-TCGCTGGCATAC-CACCAGCACTGCGTTGCT 9363 ||||| | ||| | || ||||| | || | | | | || || || || | | Sbjct 1796 TGGTTGAGAGTGTTCTCTTGTTCAGAGTGTCCCCCGAAGCTTCGCCCGC-CT-CGCTTCC 1739 Query 9364 TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 9423 |||||||||| ||||||||||| ||||| | ||| || || | | ||| || Sbjct 1738 TTCCCACGGCGTCAATCTCATCGATGAACAGAATGCAGGGAGCGTGCTTGCGTGCCTGGG 1679 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9483 | || | || | ||||| || ||| || || |||||||| |||| || | | | Sbjct 1678 CGAACATGTCTCTCACCCTGGAGGGGCCTACTCCCACAAACATTTCCAGGAACTCGGAGC 1619 Query 9484 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 ||| ||| || || |||||| ||||| | ||| |||||| | || |||||| || ||| Sbjct 1618 CGG-ACACTGTGAGGAAGGGCACATTGGCTTCTCCCGCAGTAGCCTTGGCGAGCAGCGTC 1560 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| || ||||| || | ||| | || ||| || |||||||| || Sbjct 1559 TTACCAGTTCCTGGAGGTCCTGTGAGCATAGCTCCCTTGGGGATCTTGGCTCC 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589473165770160