Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_014900.1
Length=40986
Score E
Sequences producing significant alignments: (Bits) Value
seq6760 280 4e-71
seq725 257 4e-64
>seq6760
Length=71796
Score = 280 bits (310), Expect = 4e-71
Identities = 362/500 (72%), Gaps = 0/500 (0%)
Strand=Plus/Plus
Query 1513 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 1572
|||||||| || || ||||| || || || || || || || | || || ||||| |
Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396
Query 1573 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 1632
|| | ||||| |||||||||| |||||| | | |||||| || ||| |||| ||
Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456
Query 1633 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 1692
||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | |
Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516
Query 1693 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 1752
|| | || || || ||||| || || || ||||| |||||||| || ||||| || ||
Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576
Query 1753 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 1812
|| || |||||||| | |||||| || || ||||| | |||||| |||||||| |
Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636
Query 1813 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 1872
|||| ||||| ||||| || || || || |||||| || || || ||||| ||
Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696
Query 1873 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 1932
||||| ||||| || | || ||||| || || || || || |||||||| ||
Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756
Query 1933 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 1992
|||||||| ||||| || || || || |||||||| | || || |||||||||||||||
Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816
Query 1993 TCAGCTGTCTTACGCTTCAA 2012
||||| | |||||||| ||
Sbjct 16817 TCAGCGCTTTTACGCTTAAA 16836
>seq725
Length=236385
Score = 257 bits (284), Expect = 4e-64
Identities = 489/708 (69%), Gaps = 13/708 (2%)
Strand=Plus/Plus
Query 3675 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 3734
|||||||||| || | || || || | || || ||||| | || |||||||||||
Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986
Query 3735 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 3794
| ||| || ||||| || | || || || |||||| ||||| || ||||| || ||
Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046
Query 3795 CGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTA 3854
|| || || | ||| || | | ||||| |||| || |||||| ||||| | |||
Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103
Query 3855 -GGCTTGAATACTGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 3910
||| ||||| | ||| | |||| ||||| |||| | || |||
Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162
Query 3911 CCAGTTTTCCTCATGCCGCCGATTAGTCATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 3970
||||||| | ||| || ||| ||| || ||| || | ||| || || | ||
Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222
Query 3971 GGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 4030
||||||||||||||||| || |||| |||||||| ||||||||||| ||||| || ||
Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282
Query 4031 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTC 4090
|||||||||||| || ||||| | ||| || || |||||||| | ||||||||| ||
Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342
Query 4091 AAAAGTCATGTCAGGCGTCTCTCCTAATTTATTTACCCTCCATGCTTCTGCCTTCAGTTT 4150
|||||| | |||||| || || | | || | ||| |||| || |||
Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402
Query 4151 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 4209
||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| |||||
Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461
Query 4210 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 4269
||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| |
Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521
Query 4270 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGACTGAAG 4329
|||||| ||| |||||| | ||||| |||||| | | ||| | ||
Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578
Query 4330 TGCCGCAATGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTCGGTTT 4377
||| ||||| || ||||| || ||| || ||||||||| || |||||
Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626
Score = 158 bits (174), Expect = 3e-34
Identities = 152/195 (78%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 3137 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 3196
|||||||| ||||||||||||| |||||||| | ||| || || || || || ||
Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539
Query 3197 CAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACCATTTCGATAGACTCCCAGCCACC 3256
| ||||| || |||||||| || |||| || ||||| ||||| ||||||||||| ||
Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599
Query 3257 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAGCTTGCCCACGTGTG 3316
||||||||| | || || | ||| || || ||||||| | |||||||||||| |||||
Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659
Query 3317 CCTCAGGTCATGAAA 3331
|||||||| |||||
Sbjct 175660 TCTCAGGTCGTGAAA 175674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130926492643984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |