Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq828 111 1e-19 seq785 87.8 1e-12 >seq828 Length=218660 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 27388 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAAC 27447 ||| || ||||| |||| ||||| ||| |||||| |||||||| ||| || || || Sbjct 42143 AGTGAAAGTACGGGTAATCACGTCACGCTGCTGTTCAGCAGTCAGTGAGTTGAAACGTAC 42202 Query 27448 AGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATC 27507 ||||||||||| ||||| ||||||| || || ||||| ||||||||||| ||||| Sbjct 42203 CGCATAGCCAGACACACGAATAGTCAGCTGTGGGTATTTCTCAGGATGTTTAACCGCATC 42262 Query 27508 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27558 || ||||| | | || || || || ||||||||||||||||| Sbjct 42263 TTCCAGTGTTTCACGACGCAGTACGTTAACGTTCAGGTGCTGACCACCTTC 42313 >seq785 Length=396209 Score = 87.8 bits (96), Expect = 1e-12 Identities = 236/358 (66%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 53247 TATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTTCAACTCTAATGGACAG 53306 |||||||| | ||| | |||||||| | ||||| || || | | || || ||| Sbjct 142694 TATGACGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAG 142635 Query 53307 AGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGAAGCACGTCTAGTACAG 53366 | || ||| | ||||| |||||||| || || || || |||||| | || || | ||| Sbjct 142634 ACGCCGTTTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGGGAATCGCGCCTGATCCAG 142575 Query 53367 AAAGCAATACTGAAAGTA--CGCATGGATGGTTTAGGTATCAAT---AAACGTACAGCTA 53421 || |||| ||| ||| ||||| | || | || | ||| ||| || ||| Sbjct 142574 CAATCAATTCTGC--GTAACCGCATTGCCGGACTGGGCAAAAATCGCAAA---ACCGCTG 142520 Query 53422 TCTTCCCGAAACTGGTATTTGTACTTCGTGATGGCGTAAATATGAAACCAGGAGATGTTA 53481 | ||||| |||||||| |||| | ||||| ||| | ||| ||| | || || | | Sbjct 142519 TATTCCCAAAACTGGTGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCA 142460 Query 53482 ATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTATGTATCCAGATTATA 53541 | || ||||||||| | | || || |||| | | |||||||| || || Sbjct 142459 ACTACGACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCC 142400 Query 53542 TCAGCTATGATAAGGTTGTGGAAGTTACTGGTGACTATAAAGTTTCTATGGGCTGCCG 53599 ||| |||||| |||| ||| |||| || ||| | ||| | ||||||||||| Sbjct 142399 TCAATTATGATCAGGTGGTGAAAGTCACAGGTTCGTTCAAAACGCCGATGGGCTGCCG 142342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378280788359888