Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq223 114 8e-21 seq15643 111 1e-19 seq8521 111 1e-19 seq4062 105 4e-18 seq48539 102 5e-17 >seq223 Length=511576 Score = 114 bits (126), Expect = 8e-21 Identities = 320/487 (66%), Gaps = 8/487 (2%) Strand=Plus/Plus Query 6059 CCACCCGGAAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAAC 6118 || |||||||| ||||||||||| ||||| ||||||||||||||||| || | ||| || Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 6119 TCGCGGACACTTGTGACGAACACCTTACGTTTGGAGTCATCGTTCATAAAATAAAACGGA 6178 || || | ||||| || | || || | | ||| ||||| ||||| ||||| Sbjct 113558 TCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGGG 113617 Query 6179 TCGCTCAACGTCCACCCCCCTATGGATGGTAGGACTGTCAACGAAGGGTTGTGACGTTTG 6238 || ||||||||| || || ||||| || | | | ||| || | | ||| Sbjct 113618 TCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTTC 113677 Query 6239 ATGGCCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTC 6298 | ||||||||||| ||||| ||||| || || | | | || | ||||||| | Sbjct 113678 AGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTGC 113737 Query 6299 TGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCA 6358 || || | |||| ||| |||||| ||||| || || || || || | || || Sbjct 113738 TGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCCC 113797 Query 6359 GCGCAGGATTTCTGTAGCGCCTCAAAGGAATTG---GGAATCTGCTTGAGGGCGTCGTTT 6415 || |||| || | |||| || || || ||| || | |||||| Sbjct 113798 GCACAGGCGCGTTGCAAGGCCTGAA---AACTGCCCTCAATGCTTTTTAAACTGTCGTTA 113854 Query 6416 ATGCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATT 6475 || |||| || || ||||| || |||| ||||||| | || ||||| || | Sbjct 113855 ATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCA 113914 Query 6476 GGTACCTTGTCAATGG-GAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACC 6534 || | || || | || ||| | | | |||||||| |||||||| || ||||| || || Sbjct 113915 GGGATTTTATCCACGGAGAATCCG-CGACCATACACGCCCCACTCAACAAAATATGCGCC 113973 Query 6535 GACGACC 6541 |||||| Sbjct 113974 AACGACC 113980 >seq15643 Length=27379 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||||| |||| || ||||| || || || || |||||| | ||| |||| || Sbjct 12255 ACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAAAGGGTACGTCCATCCTCG 12196 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || | | ||||| ||| | || | || || ||||| Sbjct 12195 AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGG 12136 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | | || | ||| || ||| || || | ||| |||||||| Sbjct 12135 ATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACCTCAAGGGTGATGGTTTTC 12076 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || |||||||| || |||||||| Sbjct 12075 CCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 >seq8521 Length=40141 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||||||||| || ||| | ||| |||| ||| Sbjct 2227 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCTTCC 2168 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | | ||||| ||| | || | || ||||| || Sbjct 2167 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 2108 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| || || || || | ||| || |||||| || | ||| || || | Sbjct 2107 ATCTTGGCTTTCAC--ATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTCT 2050 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||| || ||||||||| Sbjct 2049 TGCCGGTAAGGGTCTTCACGAAAATCTGCATA 2018 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| |||||| | ||| |||| |||||||| |||||||| || Sbjct 2665 TCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAG 2606 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| ||| | || | || |||||||| ||||| || || Sbjct 2605 ATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTC 2546 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || || |||||| |||| ||| || || || || || |||||||| || Sbjct 2545 TCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGACG 2486 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 2485 AAGATCTGCATA 2474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||||| || ||||| ||||| |||||| | ||| |||| ||| Sbjct 2911 ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCTTCC 2852 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| ||||| || | | ||||| ||| | || | || ||||| || Sbjct 2851 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 2792 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| || || || || | || || |||||| || | ||| ||||| | Sbjct 2791 ATCTTGGCTTTCAC--ATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTCT 2734 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || || || ||||||||||||||| Sbjct 2733 TCCCGGTCAGGGTTTTGACAAAGATCTGCATA 2702 >seq4062 Length=67394 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||||| |||| ||| | ||| || ||||| ||||| ||||||||||| | | | Sbjct 48379 CCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTCCTGCC 48320 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| |||||||| || ||||| || || || | ||||||||| | || | || ||||| Sbjct 48319 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTT 48260 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 || ||||| ||||| | | || | ||| | ||| || |||| ||| || Sbjct 48259 ATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGGGTGAT 48200 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| |||||||| ||||||||||| Sbjct 48199 AGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 48164 >seq48539 Length=7100 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || || |||||||| |||||||||||| | ||| |||| ||| Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| ||||| || | | ||||| ||| | || | || |||||||| | Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | || | || || ||||| || | ||| |||||||| Sbjct 6803 ATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTG 6744 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| ||||| |||||||| Sbjct 6743 CCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || |||||| || || || ||||| |||||| | ||| |||| ||| Sbjct 6695 ACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCCTCC 6636 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || || || | | ||||| ||| | || | || |||||||| Sbjct 6635 AACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGG 6576 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | | || | ||| | |||||| || | || || || ||| Sbjct 6575 ATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTCTTT 6516 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||||||||| Sbjct 6515 CCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324361260206352