Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq742 206 3e-48
>seq742
Length=196864
Score = 206 bits (228), Expect = 3e-48
Identities = 1194/1900 (63%), Gaps = 51/1900 (3%)
Strand=Plus/Minus
Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031
|||| || || || |||| || | ||| || | ||||||| || |||||||| |
Sbjct 48923 CTTTGTCAACGGTGAACTGGATAGCATTTACGGCAGGCTTTGTTCTCAAGTAATACATTC 48864
Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091
||||||| || || | |||| |||||||| || ||| ||| | || || | |
Sbjct 48863 CAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTTCCGTAGTTGG 48804
Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151
| |||| | || || || | || ||||| || |||||||| || |||| || ||||
Sbjct 48803 GCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCTCGGTCGGCTG 48744
Query 47152 CCATATCTAAAATAACCCTTTGTGGTA--TCTCCCATACTGTTTTATAAATTTGTTTAAT 47209
|||| | | | | ||||| | | | ||||| ||||| || || | | | | ||
Sbjct 48743 CCATCTTGATCAGTAT--TTTGTTGGAAATTTCCCAAACTGTCTTGTAGAGATCTCTGAT 48686
Query 47210 GTCTTCTGGGAGATTAGTA----TTTTGAATAGATCCTCCgttttctataattttgtttt 47265
|| | |||| | || |||||||| ||||| ||| | || || ||||
Sbjct 48685 GTGCT-TGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGATGAGATTTT 48627
Query 47266 ttaattcatttgaccaaagttt----tcgttcagttaatgtttttaaAAGATGAGGATTA 47321
| | || | ||| | | ||| ||| | | | | ||||| ||||
Sbjct 48626 TCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGT----AGATGGTGATTC 48571
Query 47322 ACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCT 47381
|||| || ||||||||||| | || || | | | || || || || | |||||
Sbjct 48570 ACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGGGTTCA 48511
Query 47382 ATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAAT 47441
| ||||| || ||||| ||||| || || || || || |||||||||| ||| | ||
Sbjct 48510 AAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGAG-AAG 48452
Query 47442 AAGCTATTTCTT-ACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAG 47500
||| | ||| | ||||| | | | |||| ||| | ||| |
Sbjct 48451 CAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTCCACAA 48392
Query 47501 ATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACC 47560
||||| || | ||| | |||||||||||||| ||||| || | ||| | ||
Sbjct 48391 ATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGACATCC 48332
Query 47561 ATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACT 47620
|| || | || | ||| | | || || || ||||||||||||| ||||
Sbjct 48331 TGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAGAGCACC 48272
Query 47621 ATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGG 47680
||||| | ||| |||||||||| | || ||| | |||| | ||||||||
Sbjct 48271 GTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTCAAAAGG 48212
Query 47681 ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATG 47740
| || | |||||||| ||||| | |||||||| || || | ||
Sbjct 48211 CAATCTCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGGGCGGTG 48152
Query 47741 AGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800
| | || || ||||||||||| || || ||| | || |||||||| ||
Sbjct 48151 ACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGATAATTTTGTT 48092
Query 47801 TAGANNNNNNNNNNNNNNNNNNACAATTTC--TCTTAATTTATTAAAA-TCAAA---CTT 47854
| | || | |||| | | || ||| || || |||
Sbjct 48091 CAAATTTTTAGTGACAGTCTTGG---TTACGATCTTCAGCTTTTCAAAGTCGAATACCTT 48035
Query 47855 GTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT- 47913
|||| || ||||| |||| | || ||||| || | ||| || |||||||| ||||
Sbjct 48034 ATTATCTA---CAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCTACTTCATC 47978
Query 47914 -TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972
||||| ||| |||| | |||||| | || || |||| || || ||||| |||| |
Sbjct 47977 TTTGGA--AGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGA 47920
Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032
||||| || || | ||| || ||||||||||| ||||| | || ||||| |||
Sbjct 47919 TTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTTCCCGTT 47860
Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT-AACAGCTCTAGC 48091
|||| |||||||| ||||| | |||| | |||| ||||| || | || |||
Sbjct 47859 TCTACTTGAGATTCGATGATGGCCATCCACAAAGTCTGCGCCTTGATCTTCTTCT-TAGA 47801
Query 48092 TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTAT 48150
| || |||||| || || | ||||||||| || ||| ||| | |
Sbjct 47800 ACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAGCAC-TCGT 47742
Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210
||| || ||| || | || ||||| | ||||||||| | | | || |
Sbjct 47741 GTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCGACACGCT 47682
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCA 48269
|||| || | ||| || ||||| | ||| || ||||| || | | | | ||| ||
Sbjct 47681 TCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAACTTCCTCC 47623
Query 48270 TTGCCACTATTCCTTTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328
|| ||| ||||| |||| |||| ||| || || | ||| || || ||||| || || |
Sbjct 47622 TTTCCAGTATTCTTTTTCAAGTCTAAG-AATTCAAATATGTCCGCGTGCCACGGCTCAAC 47564
Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388
|| || || | | || || | || || ||||| || |||| ||| | ||| || ||
Sbjct 47563 GTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGCCGTGTT 47504
Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
|| || || | | ||| ||||| | ||||| || | || || || |||| || ||
Sbjct 47503 ATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGCGATGTA 47444
Query 48449 ACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGAT 48506
|| | |||| || | | || || || || ||||| || || || ||
Sbjct 47443 GGAACCCTTGGCTCGGATGCAGT-GTACATG-AAGGCCGATACCTCCAGCAGACTTGGAA 47386
Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566
| || |||||| | || ||||| || || || ||||| ||||||||||| ||||
Sbjct 47385 ACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCATGGCC 47326
Query 48567 AATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGAT 48626
| ||| || ||| ||||| || ||| | || ||| |||| || ||
Sbjct 47325 AGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGGGCTG 47266
Query 48627 GCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC 48686
|| ||| | || |||||||||| | | || || |||||||| | ||||| || ||
Sbjct 47265 GCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCAATGTCT 47206
Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746
|| ||||| | |||||| | ||| | ||| | ||| |||||||| |||| |||
Sbjct 47205 TCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACAACTTTC 47146
Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TG 48804
| || |||| |||||||| ||||| |||||||| ||||| ||||| || ||
Sbjct 47145 CCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTATAATTG 47086
Query 48805 AAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTC 48844
||| || | |||| || || || || | | ||||||
Sbjct 47085 AAA--TCCCTGTCATAGATGATGGAAGAGTCCAATCTTTC 47048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561625147535760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |