Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq742 206 3e-48 >seq742 Length=196864 Score = 206 bits (228), Expect = 3e-48 Identities = 1194/1900 (63%), Gaps = 51/1900 (3%) Strand=Plus/Minus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || || || |||| || | ||| || | ||||||| || |||||||| | Sbjct 48923 CTTTGTCAACGGTGAACTGGATAGCATTTACGGCAGGCTTTGTTCTCAAGTAATACATTC 48864 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 ||||||| || || | |||| |||||||| || ||| ||| | || || | | Sbjct 48863 CAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTTCCGTAGTTGG 48804 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 | |||| | || || || | || ||||| || |||||||| || |||| || |||| Sbjct 48803 GCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCTCGGTCGGCTG 48744 Query 47152 CCATATCTAAAATAACCCTTTGTGGTA--TCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 |||| | | | | ||||| | | | ||||| ||||| || || | | | | || Sbjct 48743 CCATCTTGATCAGTAT--TTTGTTGGAAATTTCCCAAACTGTCTTGTAGAGATCTCTGAT 48686 Query 47210 GTCTTCTGGGAGATTAGTA----TTTTGAATAGATCCTCCgttttctataattttgtttt 47265 || | |||| | || |||||||| ||||| ||| | || || |||| Sbjct 48685 GTGCT-TGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGATGAGATTTT 48627 Query 47266 ttaattcatttgaccaaagttt----tcgttcagttaatgtttttaaAAGATGAGGATTA 47321 | | || | ||| | | ||| ||| | | | | ||||| |||| Sbjct 48626 TCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGT----AGATGGTGATTC 48571 Query 47322 ACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCT 47381 |||| || ||||||||||| | || || | | | || || || || | ||||| Sbjct 48570 ACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGGGTTCA 48511 Query 47382 ATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAAT 47441 | ||||| || ||||| ||||| || || || || || |||||||||| ||| | || Sbjct 48510 AAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGAG-AAG 48452 Query 47442 AAGCTATTTCTT-ACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAG 47500 ||| | ||| | ||||| | | | |||| ||| | ||| | Sbjct 48451 CAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTCCACAA 48392 Query 47501 ATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACC 47560 ||||| || | ||| | |||||||||||||| ||||| || | ||| | || Sbjct 48391 ATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGACATCC 48332 Query 47561 ATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACT 47620 || || | || | ||| | | || || || ||||||||||||| |||| Sbjct 48331 TGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAGAGCACC 48272 Query 47621 ATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGG 47680 ||||| | ||| |||||||||| | || ||| | |||| | |||||||| Sbjct 48271 GTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTCAAAAGG 48212 Query 47681 ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATG 47740 | || | |||||||| ||||| | |||||||| || || | || Sbjct 48211 CAATCTCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGGGCGGTG 48152 Query 47741 AGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 | | || || ||||||||||| || || ||| | || |||||||| || Sbjct 48151 ACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGATAATTTTGTT 48092 Query 47801 TAGANNNNNNNNNNNNNNNNNNACAATTTC--TCTTAATTTATTAAAA-TCAAA---CTT 47854 | | || | |||| | | || ||| || || ||| Sbjct 48091 CAAATTTTTAGTGACAGTCTTGG---TTACGATCTTCAGCTTTTCAAAGTCGAATACCTT 48035 Query 47855 GTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT- 47913 |||| || ||||| |||| | || ||||| || | ||| || |||||||| |||| Sbjct 48034 ATTATCTA---CAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCTACTTCATC 47978 Query 47914 -TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972 ||||| ||| |||| | |||||| | || || |||| || || ||||| |||| | Sbjct 47977 TTTGGA--AGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGA 47920 Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032 ||||| || || | ||| || ||||||||||| ||||| | || ||||| ||| Sbjct 47919 TTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTTCCCGTT 47860 Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT-AACAGCTCTAGC 48091 |||| |||||||| ||||| | |||| | |||| ||||| || | || ||| Sbjct 47859 TCTACTTGAGATTCGATGATGGCCATCCACAAAGTCTGCGCCTTGATCTTCTTCT-TAGA 47801 Query 48092 TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTAT 48150 | || |||||| || || | ||||||||| || ||| ||| | | Sbjct 47800 ACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAGCAC-TCGT 47742 Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210 ||| || ||| || | || ||||| | ||||||||| | | | || | Sbjct 47741 GTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCGACACGCT 47682 Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCA 48269 |||| || | ||| || ||||| | ||| || ||||| || | | | | ||| || Sbjct 47681 TCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAACTTCCTCC 47623 Query 48270 TTGCCACTATTCCTTTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 || ||| ||||| |||| |||| ||| || || | ||| || || ||||| || || | Sbjct 47622 TTTCCAGTATTCTTTTTCAAGTCTAAG-AATTCAAATATGTCCGCGTGCCACGGCTCAAC 47564 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 || || || | | || || | || || ||||| || |||| ||| | ||| || || Sbjct 47563 GTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGCCGTGTT 47504 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 || || || | | ||| ||||| | ||||| || | || || || |||| || || Sbjct 47503 ATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGCGATGTA 47444 Query 48449 ACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGAT 48506 || | |||| || | | || || || || ||||| || || || || Sbjct 47443 GGAACCCTTGGCTCGGATGCAGT-GTACATG-AAGGCCGATACCTCCAGCAGACTTGGAA 47386 Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566 | || |||||| | || ||||| || || || ||||| ||||||||||| |||| Sbjct 47385 ACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCATGGCC 47326 Query 48567 AATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGAT 48626 | ||| || ||| ||||| || ||| | || ||| |||| || || Sbjct 47325 AGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGGGCTG 47266 Query 48627 GCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC 48686 || ||| | || |||||||||| | | || || |||||||| | ||||| || || Sbjct 47265 GCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCAATGTCT 47206 Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 || ||||| | |||||| | ||| | ||| | ||| |||||||| |||| ||| Sbjct 47205 TCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACAACTTTC 47146 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TG 48804 | || |||| |||||||| ||||| |||||||| ||||| ||||| || || Sbjct 47145 CCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTATAATTG 47086 Query 48805 AAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTC 48844 ||| || | |||| || || || || | | |||||| Sbjct 47085 AAA--TCCCTGTCATAGATGATGGAAGAGTCCAATCTTTC 47048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561625147535760