Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8056 109 4e-18 seq7925 109 4e-18 seq48539 102 7e-16 seq10172 100 2e-15 seq9023 95.1 1e-13 seq15643 93.3 3e-13 seq10259 91.5 1e-12 seq8521 86.0 5e-11 >seq8056 Length=34938 Score = 109 bits (120), Expect = 4e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | ||| ||||| ||| | ||| ||||||||||| | || || Sbjct 32121 GAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGG--ATATTGTAATCGGAAAGGGTG 32064 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| | ||||||||| || || ||||| | ||| ||||| |||||||||||| Sbjct 32063 CGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCT 32004 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 ||||| ||||||||||| ||||| || || ||||| | | | | || | Sbjct 32003 TCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAAT 31944 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || | |||||| |||||||| ||||| Sbjct 31943 GTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 Score = 100 bits (110), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| | |||||||||||||||| |||||| ||| ||||| || | || || | Sbjct 32349 GAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTACG 32290 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | |||||| || || || || || ||||| | || |||||||| || || || ||||| Sbjct 32289 TCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATGCCTTC 32230 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTAC--ATTCGAGA 563433 |||||||||||||| || || ||||| ||||| || | || | || || Sbjct 32229 CTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATC--TGAGGGTTCGACCTCCAGG 32172 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| | || || ||||| || ||||| Sbjct 32171 GTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 >seq7925 Length=34777 Score = 109 bits (120), Expect = 4e-18 Identities = 190/277 (69%), Gaps = 12/277 (4%) Strand=Plus/Plus Query 368793 AGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATT 368852 ||| || || |||||||| || || |||||||||||||| | || |||||||| || Sbjct 20404 AGTGTTTGACTGCTGGTTCGAGTCCGGTTCTATGCCTTACGCCCAGCAGCATTATCCGTT 20463 Query 368853 TGATAACGCAAAATACTTTGATAATGATAAAGATTATGT---GGCTGATTTTGTAACAGA 368909 ||| || | || | ||||| |||| | | ||||||||| | | || Sbjct 20464 TGAGAATGTGAAGGAGTTTGAG---------GATTGTTTCCCGGCTGATTTCATTGCCGA 20514 Query 368910 ATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTT 368969 ||||||||||| | |||||||| || || | || || | |||||| | | || Sbjct 20515 GGGTATTGATCAAACGAGGGGTTGGTTCTACACTTTGTTGGTTATCTCCACATCATTGTT 20574 Query 368970 CGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCA 369029 | | ||||| |||| || ||| | || | | ||| | ||| |||||||||||||| Sbjct 20575 CAACAAACCTCCTTTCAAGAATCTTATTGCTAATGGATTGGTTCTGGCATCTGATGGTCA 20634 Query 369030 AAAGATGTCAAAAAGTAAGGGTAATTATTCCGATCCT 369066 ||||||||||| || ||| |||||| | |||||| Sbjct 20635 GAAGATGTCAAAGAGAAAGAAGAATTATCCAGATCCT 20671 >seq48539 Length=7100 Score = 102 bits (112), Expect = 7e-16 Identities = 158/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||||| ||| |||| ||| ||||| || | || || | Sbjct 6932 AGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTG--AATGTTGTAGTCCGAAAGGGTAC 6875 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | ||| ||||| ||||| || | || |||||||| || |||||||||| Sbjct 6874 GTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTT 6815 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAG 563432 | || |||||||| || || || ||||| ||||| || | || || ||| | Sbjct 6814 CCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATC--TGAGGGTTCAACTTCCAA 6757 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| |||||||| || || || ||||| ||||| Sbjct 6756 GGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Score = 96.9 bits (106), Expect = 3e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||||||||| || || ||||| || | || |||||||| || ||||| ||||| || Sbjct 7098 ATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTT 7039 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAAC 563438 ||||| || || ||| || ||||| ||||| | | | | ||||| || | Sbjct 7038 GTCTTGGATCTTGGCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGTGTTAT 6979 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||||||||| ||||| || ||||| |||||||| Sbjct 6978 GGTTTTACCAGTCAGAGTCTTGACGAAGATTTGCAT 6943 Score = 95.1 bits (104), Expect = 1e-13 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | || ||||| ||| ||||| ||||||||||| | || ||| Sbjct 6477 GAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGG--ATATTGTAATCGGAGAGGGTT 6420 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||| | || || || || ||||| || || |||||||| ||||| || ||| Sbjct 6419 CGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCT 6360 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||| |||||||||||| || || ||||| ||||| | | | || || | Sbjct 6359 TCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATC-GGAAGGCTCCACCTCCAA 6301 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | || || ||||| | ||||| |||||||| ||||| Sbjct 6300 AGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259 >seq10172 Length=59204 Score = 100 bits (110), Expect = 2e-15 Identities = 245/367 (67%), Gaps = 6/367 (2%) Strand=Plus/Plus Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 || ||| ||| || | |||||| | | || ||||| | ||| |||||||||||| Sbjct 47697 TTAGATATTAAGCGGCTGATTGGACGCAAATTCGATGATCATAATGTCCAGGCAGATATG 47756 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCAT 550297 | ||||||||||| | |||| |||| | | ||| | ||| ||| ||| ||| Sbjct 47757 CAACATTGGCCTTTTGATGTTGTGAATGATAACTTATCACCAAAGATTAAAGTTACACAT 47816 Query 550298 GAAGGATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATCTATGGTTTTAATGAAAA 550355 ||||| | || ||| || || ||| |||| | ||| || | | ||| Sbjct 47817 AAAGGAAGAGAGAAG--ATTGTCTGCCCCGAAGAAATAAGCGCCATGATTCTGACGAATT 47874 Query 550356 TGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTA 550414 |||| | || || || | | | | | | | ||| |||||||| || || || ||| Sbjct 47875 TGAAGGAGACGGC-AGAGATGTACCTCGGAATGCCAGTCACGGATGCTGTCATCACCGTA 47933 Query 550415 CCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGA 550474 || || || || || || || || | || |||| |||||||| |||||| || Sbjct 47934 CCTGCCTACTTCAACGATTCCCAGAGATTGGCCACTATTGATGCTGGTAATATTGCGGGG 47993 Query 550475 CTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGAT 550534 |||||||||||||| ||||| || || ||||| || || || |||| |||||||| || Sbjct 47994 CTTAATGTTCTTCGAATTATTAACGAGCCTACCGCAGCCGCTATTGCTTATGGACTAGAG 48053 Query 550535 AAACATA 550541 ||| ||| Sbjct 48054 AAATATA 48060 >seq9023 Length=34353 Score = 95.1 bits (104), Expect = 1e-13 Identities = 219/325 (67%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 550222 TGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA 550281 ||| ||||||||||| | ||||||||||| | |||| |||| | || ||| | Sbjct 8854 TGTCCAGGCAGATATTCAACATTGGCCTTTTGATGTTGTGAATGATAACTCAACACCAAA 8913 Query 550282 TATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCA-GAACAAATTTCATCTA 550340 ||| ||| ||| | ||||| | ||| | ||| |||| ||| |||| | | Sbjct 8914 CATTAAAGTTACGTACAAAGGAAGCGAGAAA-ATTTTCCACCCCGAAGAAATAAGCGCCA 8972 Query 550341 TGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGAT 550399 || || ||| ||| |||||| | || || || || | || | || || | |||| Sbjct 8973 TGATTCTAACGAATATGAAAAAGACGGCAGAGGCATTCCTCGGA-ATGACTGTCAAGGAT 9031 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || || ||||| | || | || || | ||||| Sbjct 9032 GCTGTCATCACCGTGCCTGCCTACTTCAATGAACCCCAGAGATTGGCCACCATTGATGCG 9091 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| | |||| || |||||||| ||||| ||||| || || || || || ||||| || Sbjct 9092 GGAACTGTTGCGGGGCTTAATGTCCTTCGCATTATTAACGAGCCCACCGCAGCTGCTATT 9151 Query 550520 GCATATGGACTTGATAAACATAATG 550544 || ||||||||||| ||| ||| || Sbjct 9152 GCTTATGGACTTGAGAAAAATATTG 9176 >seq15643 Length=27379 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||||||||| | || || | | ||| || || ||||||||||| || || | || Sbjct 12228 ATATTGTAATCTGAAAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTC 12169 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| ||||| ||||||||||| ||||| || || ||| || || || || Sbjct 12168 TGCTGATCTGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTG 12109 Query 563413 TCAGTGTG-AGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| | | ||| || || || | ||||| || ||||| || || |||||||| || Sbjct 12108 TCAGAGGGCTCTAC-CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 12050 Query 563472 CAT 563474 ||| Sbjct 12049 CAT 12047 >seq10259 Length=36189 Score = 91.5 bits (100), Expect = 1e-12 Identities = 281/432 (65%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 551904 CGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACT 551963 ||| |||| | |||| |||||||| || | |||||||||| || | | || Sbjct 4630 CGTTTAAGGGCATCTTGTGAAAGAGCAAAGAGGAATCTTTCATCTTATAACAACGCTACC 4571 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 || ||| ||||||| ||||| ||||| || |||| | | |||| |||| ||| Sbjct 4570 ATCGAAATAGATTCCTTATTCGAGGGCATCGATTTTCGTGATTCTATAACGAGAGCCGGT 4511 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 || ||||| | ||| ||||| |||||| ||||| ||||| ||| | | | ||| Sbjct 4510 TTCGAAGAATTAAATTCCGATCTGTTTAGATCCACAATGGAACCTGTAAAGAAGGCATTA 4451 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 | ||| | || || | ||| | | | || || ||||| || || || ||||| | Sbjct 4450 AATGATGCCAATATGAACAAAGACCAGCTGCACGATATTGTCCTCGTCGGAGGATCCTCC 4391 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 | |||||| |||| | | | | | ||||||||||| ||| | | ||| || Sbjct 4390 CGCATTCCTCAAATCCAGAAGCTTCTCCGAGACTATTTCAATGGCAAAGAGCTGAAT-AA 4332 Query 552204 AGTGTT-AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | ||| |||| || |||||| | || ||||| || || | ||||| ||| ||| Sbjct 4331 ATCGTTGCATCCTGAAGAGGCTATAGCTTATGGCGCAGCGGTGCAAGCTGCTCACCTTCA 4272 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| | | | || || | | || | | ||| | || || ||||| || |||| Sbjct 4271 AGGAGACATGTCTAAAGAATTGAAGAAACTACTTCTTCTGGAAGTCACTCCCCTGACTCT 4212 Query 552323 TGGTTTAGAAAC 552334 ||||||||||| Sbjct 4211 GGGTTTAGAAAC 4200 >seq8521 Length=40141 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || | ||||||||| ||| || ||| ||||| |||| || || | Sbjct 2009 GAGACGGAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTACG 1950 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||||||||| || || ||||| || | || |||||||| || ||||| ||||| Sbjct 1949 ACCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTC 1890 Query 563376 TTTATCTTGAATTTT 563390 || ||||| || || Sbjct 1889 CTTGTCTTGGATCTT 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025655747638660