Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_016158.1
Length=49576
Score E
Sequences producing significant alignments: (Bits) Value
seq725 221 4e-53
>seq725
Length=236385
Score = 221 bits (244), Expect = 4e-53
Identities = 401/580 (69%), Gaps = 20/580 (3%)
Strand=Plus/Plus
Query 29224 GTTGCCCCAATGATCCCACCCCGGCGCACCGCAACGACTGAACAACTCGATGCGCGGTAC 29283
||| |||||||||| ||| || | ||| | | |||||||| | ||| ||||| | ||
Sbjct 177918 GTTACCCCAATGATGCCAGCCAGCCGCGTCACCGCGACTGAAAAGCTCAATGCGGGAAAC 177977
Query 29284 GTCGCCGTAGAGCAACTCAAGACGGTGGCGAACCTCCCACGGCTTTTCACTGTGGGCACC 29343
| ||||| || || || ||| || ||||| |||||||| ||||| ||||
Sbjct 177978 CTGACCGTAAAGTTCTTCGAGGCGGAAACGCACCTCGGCGGGCTTTTCGCTGTGCTCACC 178037
Query 29344 GAGCGGGCTGTAAACCACCTGCTTAATCCCGGCGTGCTGTC--GCTCAAGCCCAGCGCCG 29401
| ||||| ||| ||||| |||| | ||| ||| | |||| ||||| ||||||
Sbjct 178038 ACGGCAGCTGTGAACTACCTGTTTAACGCTAGCG--CTGACACGCTCGAGCCCGGCGCCG 178095
Query 29402 CGGGTGGCAATCAGCAGGTCTTCGGTATTTGCACGGGTGTGGTTGCCGCCGTTCATGCGC 29461
|||||||||||||| | ||| || | || | | ||||| |||||| || ||||| |
Sbjct 178096 CGGGTGGCAATCAGTACGTCCTCACTGTTCCCTCTGGTGTAGTTGCCTCCATTCATCACC 178155
Query 29462 GTCTCGGCGTTAAGCAGGTCGAGGAAGTCGTAAAAGTCG---GTGATTTCACCCTCGGCC 29518
||||| || | ||| || || || || | ||| ||| || ||| | || |||
Sbjct 178156 GTCTCAGCACTCAGCGCATCCAGAAAATCCTCAAAATCGAGCATGGTTTGA---TCTGCC 178212
Query 29519 AGCGCCTTGTTGATGCGCATCTCG-GCGTTCTGATTAAGCTTCACCCAGGTAAAGCCCTT 29577
|||||| | |||||| | || || | | | |||||| ||||| || ||||| ||
Sbjct 178213 AGCGCCCGTTCTATGCGC-CCGCGAGCCTGTTCGTAAAGCTTGACCCATGTGAAGCCTTT 178271
Query 29578 CATCGTGCGAACGGTAAAGCCCCAGGCCTCGGCAAGTTCGATAGCCTCCTGGTTATGCG- 29636
||| || || | |||||||| |||| || | || | |||||| | |||
Sbjct 178272 CATGGTCTTGACCTTGAAGCCCCACGCCTGTGCCAACTCAACGGCCTCCGCG----GCGA 178327
Query 29637 ---TGCCGGTGTACCACATCGCCAGCACCGAGTTTTCGGCGGCAAGCTCCCACACCGGCA 29693
||||||||||||||||||| || |||| |||||||| || | ||| || ||||
Sbjct 178328 AATTGCCGGTGTACCACATCGCAAGTACCGCATTTTCGGCAGCGATTGACCAGACTGGCA 178387
Query 29694 GGCGCTTAATGTCGATTAGCTTCATGGTTGAGTAGTGATCGGCGGCAGCGCCGTTGCTGA 29753
| |||||||| || ||| ||| || ||| || ||| | || |||||||||||||
Sbjct 178388 GACGCTTAATATCTTCGAGCGACATCGTGTTGTAATGGTCGCCAGCGGCGCCGTTGCTGA 178447
Query 29754 TGGTGTTGCCGTAAGACCAGGGCGGATCAGCGTAGATAAG 29793
| |||||| ||| ||| |||||||| || ||||||||
Sbjct 178448 TTTTGTTGCTGTATTGCCACGGCGGATCCGCATAGATAAG 178487
Score = 179 bits (198), Expect = 1e-40
Identities = 215/290 (74%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTAAAAACAGTCGC 26021
||||||||||||||||| |||||||| ||| ||||||| ||||| ||||||| || |
Sbjct 175387 CTTCTAAGCCGTAGGTCACAGGTTCGAGCCCTGTAGGGCGTACCATTCAAAAACAATCAC 175446
Query 26022 TTACGCCAGTTTCAAG--CCAGCCTGATTTTCTCCTTGTGTCGTATTTGTGTCATGGTTG 26079
||| | |||| | || || | || || | | ||||| | ||
Sbjct 175447 TTAG--CTGTTTGTTGTTCCCTCCGAAATTAGCGAGTGGGACAGATTTGGGACAGAAACC 175504
Query 26080 CCAAAAATGGCATCAATTTTCCGTGCGTGTTCGCTTAAGTGGTTCGGTGCCAGGTGAGCG 26139
|||||||| || || || | | ||||| || |||| || ||||| ||||| || |||
Sbjct 175505 CCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGTTAAATGATTCGGCGCCAGATGCGCG 175564
Query 26140 TATCGACGTACCATTTCGATGGACTCCCAGCCGCCCATTTCTTGCAGAACTGACAACGGA 26199
||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 175565 TATCGCCGTACCATCTCGATCGACTCCCAGCCGCCCATTTCCTGAAGAACTGACAACGGG 175624
Query 26200 ACGCCGGACTGAATTAACCAGCTCGCCCAGGTATGCCGGAGGTCATGAAA 26249
|| |||| |||||| | |||||| ||||| || || | ||||| |||||
Sbjct 175625 ACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTGTCTCAGGTCGTGAAA 175674
Score = 118 bits (130), Expect = 3e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 43425 CCTGAATCCGGTTATCACATCACCTTCATCATTCCCATGCCAAAAAGCTGGAGCCAGAAG 43484
||||| | ||| | ||| |||| ||| | | |||||||| ||||||||| | |||
Sbjct 190431 CCTGATTGCGGCTGGCACGTCACGTTCGTATTGCCCATGCCCGCCAGCTGGAGCAAAAAG 190490
Query 43485 AAGCGTGCGCAACTTAACGGCCAGGCTCATCAGCAGAAACCGGATAAAGACAACCTGGAA 43544
|| | || | ||| || |||| ||||||||||| || |||||||| ||||||
Sbjct 190491 AAAAAGACAGAAATGGCTGGCAAGCCTCACCAGCAGAAACCAGACAAAGACAATCTGGAA 190550
Query 43545 AAGGCGCTTCTCGATGCCATTTTCGACGACGACAGCCGCGTCTGGGATGGCCGGGTGACA 43604
|| || | |||||||| ||||| || |||||| |||| ||||||| || | || ||
Sbjct 190551 AAAGCATTACTCGATGCAATTTTTGAAGACGACTGCCGGATCTGGGACGGTAGAGTTTCA 190610
Query 43605 AAACTTTGGGGAGAGAAGGGACAGATCATTATTGGGGA 43642
|| ||||||| || | || ||||| ||||||| ||
Sbjct 190611 AAGGTTTGGGGTGAAACAGGTCAGATACTTATTGGAGA 190648
Score = 82.4 bits (90), Expect = 2e-11
Identities = 91/119 (76%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 4045 GAGCAGGTTTACGCCTCAGCAGTGGCTCAGCCATTCCAGGGGCGCTTGCTGAAGGAGTGG 4104
|| ||||| |||||| | || |||| |||||||| |||||||||||||||| |||| |
Sbjct 198499 GATCAGGTATACGCCGCCGCGATGGCCCAGCCATTTCAGGGGCGCTTGCTGAGCGAGT-G 198557
Query 4105 GGCCAG-AAGCTTGAAACGGATCGGCTGGATAAAATCACCAACGCTGTGCGCACCGGTT 4162
|||||| || ||||||| || ||| || |||| ||| |||| || |||||||
Sbjct 198558 GGCCAGCAATCTTGAAAGCGACCGGATGACGCGGATCATCAATACTGTCCGAACCGGTT 198616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158392023849704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |