Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq725 221 4e-53 >seq725 Length=236385 Score = 221 bits (244), Expect = 4e-53 Identities = 401/580 (69%), Gaps = 20/580 (3%) Strand=Plus/Plus Query 29224 GTTGCCCCAATGATCCCACCCCGGCGCACCGCAACGACTGAACAACTCGATGCGCGGTAC 29283 ||| |||||||||| ||| || | ||| | | |||||||| | ||| ||||| | || Sbjct 177918 GTTACCCCAATGATGCCAGCCAGCCGCGTCACCGCGACTGAAAAGCTCAATGCGGGAAAC 177977 Query 29284 GTCGCCGTAGAGCAACTCAAGACGGTGGCGAACCTCCCACGGCTTTTCACTGTGGGCACC 29343 | ||||| || || || ||| || ||||| |||||||| ||||| |||| Sbjct 177978 CTGACCGTAAAGTTCTTCGAGGCGGAAACGCACCTCGGCGGGCTTTTCGCTGTGCTCACC 178037 Query 29344 GAGCGGGCTGTAAACCACCTGCTTAATCCCGGCGTGCTGTC--GCTCAAGCCCAGCGCCG 29401 | ||||| ||| ||||| |||| | ||| ||| | |||| ||||| |||||| Sbjct 178038 ACGGCAGCTGTGAACTACCTGTTTAACGCTAGCG--CTGACACGCTCGAGCCCGGCGCCG 178095 Query 29402 CGGGTGGCAATCAGCAGGTCTTCGGTATTTGCACGGGTGTGGTTGCCGCCGTTCATGCGC 29461 |||||||||||||| | ||| || | || | | ||||| |||||| || ||||| | Sbjct 178096 CGGGTGGCAATCAGTACGTCCTCACTGTTCCCTCTGGTGTAGTTGCCTCCATTCATCACC 178155 Query 29462 GTCTCGGCGTTAAGCAGGTCGAGGAAGTCGTAAAAGTCG---GTGATTTCACCCTCGGCC 29518 ||||| || | ||| || || || || | ||| ||| || ||| | || ||| Sbjct 178156 GTCTCAGCACTCAGCGCATCCAGAAAATCCTCAAAATCGAGCATGGTTTGA---TCTGCC 178212 Query 29519 AGCGCCTTGTTGATGCGCATCTCG-GCGTTCTGATTAAGCTTCACCCAGGTAAAGCCCTT 29577 |||||| | |||||| | || || | | | |||||| ||||| || ||||| || Sbjct 178213 AGCGCCCGTTCTATGCGC-CCGCGAGCCTGTTCGTAAAGCTTGACCCATGTGAAGCCTTT 178271 Query 29578 CATCGTGCGAACGGTAAAGCCCCAGGCCTCGGCAAGTTCGATAGCCTCCTGGTTATGCG- 29636 ||| || || | |||||||| |||| || | || | |||||| | ||| Sbjct 178272 CATGGTCTTGACCTTGAAGCCCCACGCCTGTGCCAACTCAACGGCCTCCGCG----GCGA 178327 Query 29637 ---TGCCGGTGTACCACATCGCCAGCACCGAGTTTTCGGCGGCAAGCTCCCACACCGGCA 29693 ||||||||||||||||||| || |||| |||||||| || | ||| || |||| Sbjct 178328 AATTGCCGGTGTACCACATCGCAAGTACCGCATTTTCGGCAGCGATTGACCAGACTGGCA 178387 Query 29694 GGCGCTTAATGTCGATTAGCTTCATGGTTGAGTAGTGATCGGCGGCAGCGCCGTTGCTGA 29753 | |||||||| || ||| ||| || ||| || ||| | || ||||||||||||| Sbjct 178388 GACGCTTAATATCTTCGAGCGACATCGTGTTGTAATGGTCGCCAGCGGCGCCGTTGCTGA 178447 Query 29754 TGGTGTTGCCGTAAGACCAGGGCGGATCAGCGTAGATAAG 29793 | |||||| ||| ||| |||||||| || |||||||| Sbjct 178448 TTTTGTTGCTGTATTGCCACGGCGGATCCGCATAGATAAG 178487 Score = 179 bits (198), Expect = 1e-40 Identities = 215/290 (74%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTAAAAACAGTCGC 26021 ||||||||||||||||| |||||||| ||| ||||||| ||||| ||||||| || | Sbjct 175387 CTTCTAAGCCGTAGGTCACAGGTTCGAGCCCTGTAGGGCGTACCATTCAAAAACAATCAC 175446 Query 26022 TTACGCCAGTTTCAAG--CCAGCCTGATTTTCTCCTTGTGTCGTATTTGTGTCATGGTTG 26079 ||| | |||| | || || | || || | | ||||| | || Sbjct 175447 TTAG--CTGTTTGTTGTTCCCTCCGAAATTAGCGAGTGGGACAGATTTGGGACAGAAACC 175504 Query 26080 CCAAAAATGGCATCAATTTTCCGTGCGTGTTCGCTTAAGTGGTTCGGTGCCAGGTGAGCG 26139 |||||||| || || || | | ||||| || |||| || ||||| ||||| || ||| Sbjct 175505 CCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGTTAAATGATTCGGCGCCAGATGCGCG 175564 Query 26140 TATCGACGTACCATTTCGATGGACTCCCAGCCGCCCATTTCTTGCAGAACTGACAACGGA 26199 ||||| |||||||| ||||| |||||||||||||||||||| || |||||||||||||| Sbjct 175565 TATCGCCGTACCATCTCGATCGACTCCCAGCCGCCCATTTCCTGAAGAACTGACAACGGG 175624 Query 26200 ACGCCGGACTGAATTAACCAGCTCGCCCAGGTATGCCGGAGGTCATGAAA 26249 || |||| |||||| | |||||| ||||| || || | ||||| ||||| Sbjct 175625 ACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTGTCTCAGGTCGTGAAA 175674 Score = 118 bits (130), Expect = 3e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 43425 CCTGAATCCGGTTATCACATCACCTTCATCATTCCCATGCCAAAAAGCTGGAGCCAGAAG 43484 ||||| | ||| | ||| |||| ||| | | |||||||| ||||||||| | ||| Sbjct 190431 CCTGATTGCGGCTGGCACGTCACGTTCGTATTGCCCATGCCCGCCAGCTGGAGCAAAAAG 190490 Query 43485 AAGCGTGCGCAACTTAACGGCCAGGCTCATCAGCAGAAACCGGATAAAGACAACCTGGAA 43544 || | || | ||| || |||| ||||||||||| || |||||||| |||||| Sbjct 190491 AAAAAGACAGAAATGGCTGGCAAGCCTCACCAGCAGAAACCAGACAAAGACAATCTGGAA 190550 Query 43545 AAGGCGCTTCTCGATGCCATTTTCGACGACGACAGCCGCGTCTGGGATGGCCGGGTGACA 43604 || || | |||||||| ||||| || |||||| |||| ||||||| || | || || Sbjct 190551 AAAGCATTACTCGATGCAATTTTTGAAGACGACTGCCGGATCTGGGACGGTAGAGTTTCA 190610 Query 43605 AAACTTTGGGGAGAGAAGGGACAGATCATTATTGGGGA 43642 || ||||||| || | || ||||| ||||||| || Sbjct 190611 AAGGTTTGGGGTGAAACAGGTCAGATACTTATTGGAGA 190648 Score = 82.4 bits (90), Expect = 2e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 4045 GAGCAGGTTTACGCCTCAGCAGTGGCTCAGCCATTCCAGGGGCGCTTGCTGAAGGAGTGG 4104 || ||||| |||||| | || |||| |||||||| |||||||||||||||| |||| | Sbjct 198499 GATCAGGTATACGCCGCCGCGATGGCCCAGCCATTTCAGGGGCGCTTGCTGAGCGAGT-G 198557 Query 4105 GGCCAG-AAGCTTGAAACGGATCGGCTGGATAAAATCACCAACGCTGTGCGCACCGGTT 4162 |||||| || ||||||| || ||| || |||| ||| |||| || ||||||| Sbjct 198558 GGCCAGCAATCTTGAAAGCGACCGGATGACGCGGATCATCAATACTGTCCGAACCGGTT 198616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158392023849704