Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_016571.1
Length=284757
Score E
Sequences producing significant alignments: (Bits) Value
seq9405 159 6e-34
seq785 89.7 9e-13
seq725 87.8 3e-12
>seq9405
Length=40329
Score = 159 bits (176), Expect = 6e-34
Identities = 177/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 208704 AGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCATG 208763
|| ||||| |||||||| || || | ||| | |||||| |||||||| || || |||
Sbjct 35881 AGCGTCTGGTATTTCAGATTGCTCAGGAAGATGTGTTTTTCGTGATCCGGCAACGCCTGA 35822
Query 208764 TAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGT 208823
| || |||||||| ||||| ||||| | ||||| |||||||||||||| || || ||
Sbjct 35821 AAATCGATACGGTCGCGGGAAACATCAATCTCTTCCGGACGCCAGAAGAAGGACAGCTGC 35762
Query 208824 TTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGACG 208883
|| || || ||||| |||||||| |||| |||||| |||||| |||| | |||||| ||
Sbjct 35761 TTTTCGATCAGTTTTTCAAAGATTTCATGCTTCTGCTGGTCGAAACGGGCAACGTTAACC 35702
Query 208884 TTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTGGTTGAAAGT 208939
|| || | |||||| | || | | ||||||||||| || ||| |||||
Sbjct 35701 GACTGGCCAAAGAACATTGGCTCAAGAAGCTGATCGTTTTTATTCTGGGAAAAAGT 35646
>seq785
Length=396209
Score = 89.7 bits (98), Expect = 9e-13
Identities = 71/84 (85%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 16034 AAATTATGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCT 16093
||||| ||||||||| || ||||||||| ||||||||||||||||||||| | ||||
Sbjct 187890 AAATT-TGGTGGCCCTTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCT 187948
Query 16094 CTAACCGTCTGAGCTACGGGGCCG 16117
|||||| |||||||| ||||||
Sbjct 187949 CTAACCAACTGAGCTAAAGGGCCG 187972
>seq725
Length=236385
Score = 87.8 bits (96), Expect = 3e-12
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 16118 GAATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTA 16177
|||||| ||||||||||| |||||||||||||| | ||||||||||| |||||||
Sbjct 175434 GAATGGTACGCCCTACAGGGCTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTA 175375
Query 16178 TCC-ACTGAGCTAAGAGCGC 16196
||| ||||||||||| ||||
Sbjct 175374 TCCAACTGAGCTAAGGGCGC 175355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 910310471600880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |