Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq15718 95.1 1e-14 >seq15718 Length=23337 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 || ||||| | || ||||| | || || || || ||| ||||||||| || || || Sbjct 3063 CCTGTGACCCGTGCGATCATATGAGTCAGCAGGGAATAGGAGGCGATGTTGAAAGGGACT 3122 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGA-GCTCTCCGTCGCTCAC 29990 || || |||||||| | | ||||||||||||||| || | || | || ||| ||| Sbjct 3123 CCCAGGCCCATGTCGGCGCTGCGCTGGTAGAGCTGACAGGACAGGCGCCCCTCCGC-CAC 3181 Query 29991 GTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 30050 ||| ||||| || | ||||||||| || || ||||| ||| |||| | | | || Sbjct 3182 GTAGAACTGCACCAGGCAGTGGCACGGGGGCAGGGCCATCAGGGGCAAGGCCTGCGCGTC 3241 Query 30051 CCAGGCGCACACGATGATGCGCCTGTCTTCTGG-GTTGTTC 30090 ||| | ||||| | ||||||| ||| || || |||||| Sbjct 3242 CCACGAGCACAGCACCATGCGCCGGTCATCAGGATTTGTTC 3282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408274804821482