Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq6760 288 3e-73 seq725 264 3e-66 >seq6760 Length=71796 Score = 288 bits (318), Expect = 3e-73 Identities = 366/502 (73%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 1494 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 1553 |||||||| || || ||||| || || || || || || || | || || ||||| | Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396 Query 1554 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 1613 || | ||||| |||||||||| |||||| | | |||||| || ||| |||| || Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456 Query 1614 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 1673 ||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | | Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516 Query 1674 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCTTCC 1733 || | || || || ||||| || || || ||||| |||||||| || ||||| ||||| Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576 Query 1734 AGCGCCAGATTCCATAATTTCCAGCCATTGAATTTTGAATCG--CCGGCAACACGTTCGG 1791 || || || ||||| | |||||| ||||| ||||||| ||| |||||||| ||||| Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTG--TCGAACCGGCAACGCGTTCAT 16634 Query 1792 CACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAA 1851 | |||| ||||| ||||| || || || || |||||| || || || ||||| | Sbjct 16635 CTCGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGA 16694 Query 1852 ACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAA 1911 | ||||| ||||| || | || ||||| || || || || || |||||||| | Sbjct 16695 ATAAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGA 16754 Query 1912 AGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACC 1971 | |||||||| ||||| || || || || |||||||| | || || ||||||||||||| Sbjct 16755 AATCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACC 16814 Query 1972 ACTCAGCTGTCTTACGCTTCAA 1993 ||||||| | |||||||| || Sbjct 16815 ACTCAGCGCTTTTACGCTTAAA 16836 >seq725 Length=236385 Score = 264 bits (292), Expect = 3e-66 Identities = 553/820 (67%), Gaps = 28/820 (3%) Strand=Plus/Plus Query 14344 CGTCTGAGGAACGGAGAAGAGTCCGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 14403 ||||| | ||||| || ||||| || || || || ||||| || ||||| |||| Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843 Query 14404 ATCACCGGAGGGATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCAGGTATGGGT 14463 || || || || ||||| || || || | || | |||||||| || |||||||| Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903 Query 14464 AAAACCGAACTGGCGCTGAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTCT 14523 |||||||| | || |||| | || ||||| || || || ||||| || || Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATC- 188960 Query 14524 GGCG---------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAG 14574 |||| | | |||||| ||| |||||||| |||||||||||||| ||| Sbjct 188961 GGCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAG 189020 Query 14575 GTTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCG 14634 || | || | | | || ||||| || ||| |||| || ||||| || || Sbjct 189021 GTCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCT 189080 Query 14635 TCACGTATGGACGATGAAGGATGGGCGAGAGTTGCAAGCGGGATGAAG----TTGCTGGC 14690 ||||||||| ||||||||| ||||| | | | | || || ||| | ||||| Sbjct 189081 TCACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGC 189140 Query 14691 AGATCTGGATGTGTGGGTAGTTGACGCATCGCGTTTATCTGTCGAAGAAATCAGGTCCAT 14750 ||| | |||||||| || || || ||| | | | || | ||| | | || Sbjct 189141 ----CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGAT 189196 Query 14751 TTCCGAACGCCACAAGCAGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGG 14810 | | ||| | ||||| | | | | || ||||| || || || || || || || || Sbjct 189197 TGCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGG 189256 Query 14811 GCTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAG 14870 || || || || || || ||||| || ||||| || || || || |||||||| | Sbjct 189257 CCTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGG 189316 Query 14871 CCTGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCATTAAGCCAGCTCTCCCG 14930 | ||||| |||||||| |||||||| || ||||| || ||| | || ||||| ||||| Sbjct 189317 CATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCG 189376 Query 14931 CGATGTTGAGAAGCGGCCAAAC------AAGCGCCCGACAAACGCAGATTTGCGTGATTC 14984 ||| || |||||||| ||||| || || ||| ||| | || |||| || Sbjct 189377 CGACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGG 189436 Query 14985 AGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGA 15044 || ||||| || |||||||| ||| || ||||| || || |||| ||| ||||| Sbjct 189437 GGGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGA 189496 Query 15045 -CGAGAACAGTAGCGCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCT 15103 | ||| || |||||||| || ||||||||||||||||| || ||||| ||||| Sbjct 189497 ACCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTG 189555 Query 15104 CGCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 15143 ||| ||||| |||||||||| |||| ||||| ||||| Sbjct 189556 AGCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595 Score = 239 bits (264), Expect = 1e-58 Identities = 485/708 (69%), Gaps = 13/708 (2%) Strand=Plus/Plus Query 3656 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 3715 |||||||||| || | || || || | || || ||||| | || ||||||||||| Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986 Query 3716 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 3775 | ||| || ||||| || | || || || |||||| ||||| || ||||| || || Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046 Query 3776 CGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTA 3835 || || || | ||| || | | ||||| |||| || |||||| ||||| | ||| Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103 Query 3836 -GGCTTGAATACTGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 3891 ||| ||||| | ||| | |||| ||||| |||| | || ||| Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162 Query 3892 CCAGTTTTCCTCATGCCGCCGATTAGTCATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 3951 ||||||| | ||| || ||| ||| || ||| || | ||| || || | || Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222 Query 3952 GGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 4011 ||||||||||||||||| || |||| |||||||| ||||||||||| ||||| || || Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282 Query 4012 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTC 4071 |||||||||||| || ||||| | ||| || || |||||||| | ||||||||| || Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342 Query 4072 AAAAGTCATGCCAGGCGTCTCTCCTAATTTATTTACCCTCCATGCTTCGGCCTTCAGCTT 4131 |||||| | | |||| || || | | || | ||| || | || || Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402 Query 4132 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 4190 ||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| ||||| Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461 Query 4191 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 4250 ||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| | Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521 Query 4251 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACTTGGACAGTATGCAGCGGAGATTGAAG 4310 |||||| ||| |||||| | ||||| |||||| | | ||| | || Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578 Query 4311 TGCCGCAACGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTAGGTTT 4358 ||| |||| || ||||| || ||| || ||||||||| || ||||| Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626 Score = 158 bits (174), Expect = 3e-34 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 3118 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 3177 |||||||| ||||||||||||| |||||||| | ||| || || || || || || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 3178 CAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACCATTTCGATAGACTCCCAGCCACC 3237 | ||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| || Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 3238 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 3297 ||||||||| | || || | ||| || || ||||||| | ||| |||||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 3298 CCTCAGGTCATGAAA 3312 |||||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128183136907720