Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq725 279 1e-70 >seq725 Length=236385 Score = 279 bits (308), Expect = 1e-70 Identities = 556/819 (68%), Gaps = 26/819 (3%) Strand=Plus/Plus Query 31811 CGTCTGAGGAACGGAGAAGAGTCGGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 31870 ||||| | ||||| || |||||||| || || || ||||| || ||||| |||| Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843 Query 31871 ATCACCGGAGGGATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCTGGTATGGGT 31930 || || || || ||||| || || || | || | |||||||| ||||||||||| Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903 Query 31931 AAAACCGAACTGGCGCTAAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTC- 31989 |||||||| | || || | | || ||||| || || || ||||| || || Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATCG 188961 Query 31990 -CGACG------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGG 32042 ||| | | | |||||| ||| |||||||| |||||||||||||| |||| Sbjct 188962 GCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAGG 189021 Query 32043 TTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTGAGTGTGCTGCGTAACCCAT 32102 | | || | | | || ||||| || ||| ||||| || ||||| || || | Sbjct 189022 TCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCTT 189081 Query 32103 CACGTATGGACGATGAAGGATGGGCGAGAGTTGCAAGTGGGATGAAG----TTGCTGGCA 32158 |||||||| ||||||||| ||||| | | | | || || ||| | ||||| Sbjct 189082 CACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGC- 189140 Query 32159 GATCTAGATGTGTGGGTAGTTGACGCGTCACGTTTGTCTGTCGAAGAAATCAGGTCCATC 32218 || | |||||||| || || ||||| || | | || | ||| | | || Sbjct 189141 ---CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGATT 189197 Query 32219 GCCGAACGCCACAAGCAGGAGCACCCGAATCTGTCACTGATTATGGCTGACTATCTCGGG 32278 || ||| | ||||| | | | |||| ||||| || || || || || || || || Sbjct 189198 GCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGGC 189257 Query 32279 CTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCAATTGCTCACATCTCCGGTAGC 32338 || || || || || || ||||| || ||||| || || || ||||||||||| || Sbjct 189258 CTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGGC 189317 Query 32339 CTGAAAGCGATGGCGAAAGACCTGAAAACTCCTGTTATCTCCCTAAGCCAGCTCTCCCGC 32398 ||||| |||||||| |||||||| || || || || || || || ||||| |||||| Sbjct 189318 ATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCGC 189377 Query 32399 GATGTTGAGAAGCGACCAA------ACAAACGCCCGACAAACGCAGATTTGCGTGATTCA 32452 || || ||||||||||||| | ||||| ||| ||| | || |||| || Sbjct 189378 GACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGGG 189437 Query 32453 GGAAGCATTGAACAGGATGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATG-A 32511 || ||||| || ||||| || ||| || ||||| || || |||| ||| |||| | Sbjct 189438 GGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGAA 189497 Query 32512 CGAGAACAGTAGCGCCGCACCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTC 32571 | ||| || ||||| || || ||||||||||||||||| || ||||| ||||| Sbjct 189498 CCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTGA 189556 Query 32572 GCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 32610 ||| ||||| |||||||||| |||| ||||| ||||| Sbjct 189557 GCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127080039321460