Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_018279.1
Length=49116
Score E
Sequences producing significant alignments: (Bits) Value
seq725 351 3e-92
seq7996 215 2e-51
seq19589 91.5 5e-14
seq34955 87.8 6e-13
>seq725
Length=236385
Score = 351 bits (388), Expect = 3e-92
Identities = 705/1034 (68%), Gaps = 21/1034 (2%)
Strand=Plus/Plus
Query 24669 ATGTTCGCACTTTGCGATGTTAATTCGTTTTACGCCAGTTGTGAAACTGTATTCAGACCA 24728
||||| || ||| |||||| || || || ||||| || || ||||| || | ||
Sbjct 221687 ATGTTTGCCCTTGCCGATGTGAACAGCTTCTATGCCAGCTGCGAGACTGTGTTTCGTCCT 221746
Query 24729 GATTTGAGAGGGCGCCCGGTTGTCGTACTGTCGAACAATGATGGTTGTGTGATTGCGCGC 24788
||||||| |||||| || || || || || |||||||| ||||| || ||||| |||
Sbjct 221747 GATTTGAAAGGGCGGCCAGTGGTTGTTCTTAGCAACAATGACGGTTGCGTAATTGCTCGC 221806
Query 24789 AGCACCGAGGCGAAGCAACTCGGTATCGCAATGGGTGAGCCATACTTCAAACAGAAAGAA 24848
|| || || |||||| |||| || || ||||| || || | ||| || | ||
Sbjct 221807 AGTACAGAAGCGAAGAAACTAGGAATTAAGATGGGGGACCCGTTCTTTAAGATGCGTGAT 221866
Query 24849 CGCTTCCAGCAATTTGGTGTTGTTTGCTTCAGCAGTAATTATGAGCTTTACGCTGATATG 24908
| ||| | | | || ||| ||||| ||||| | ||| || || || |||
Sbjct 221867 CTCTTTGAACGTCACAAGATAGTGACCTTTAGCAGCAATTACGCGCTGTATGCAGACATG 221926
Query 24909 ---TCGAACCGGGTAATGACCACACTCGAGGAGATGTCGCCGCGGGTAGAAATTTACAGC 24965
|||| |||| ||||| | || || |||||||| ||||| |||||
Sbjct 221927 AGTTCGA---GGGTGATGACGGTGTTGGAAGAAATGTCGCCAGCCGTAGAGGTTTACTCA 221983
Query 24966 ATTGATGAGGCTTTTTGTGATCTG-ACGGGGATACGAAGCTGCCGGGATCTGACAGATTT 25024
||||||||||| ||| | ||| | |||| || || |||| | ||||| ||| ||
Sbjct 221984 ATTGATGAGGCATTTATGAACCTGCAAGGGGTTAGTAAT-TGCCAGAATCTGGAAGAGTT 222042
Query 25025 CGGGCGCGAGATAAGAGCGACGGTCCTGAAGCGCACGCACCTGACTGTCGGCGTAGGCAT 25084
|| |||||| | || || | ||| || | | || |||| || || || || ||
Sbjct 222043 TGGACGCGAGGTGAGGGCTAAGGTTCTTCGGTGGACTGGTTTGACCGTAGGTGTTGGAAT 222102
Query 25085 TGCCCAGACGAAAACCCTTGCCAAGCTGGCTAACCATGCTGCGAAAAAGTGG-CAGCGCC 25143
||| | ||| || ||||| ||||| || |||||||||||||| || || ||| ||
Sbjct 222103 TGCACCGACTAAGACCCTAGCCAAACTAGCTAACCATGCTGCAAAGAAATGGACAA---- 222158
Query 25144 AGACCGGCGGGGTGGTTGACTTGTCGAACATTGACCGCCAGCGTCGGCTGCTGGCACTGA 25203
|||||||||| |||||||| |||| ||| | | |||||| |||| ||||| ||
Sbjct 222159 AGACCGGCGGTGTGGTTGATCTGTCTCTACTTGCCAGGCAGCGTAAGCTGATGGCATTGG 222218
Query 25204 TACCCGTAGAGGATGTGTGGGGTGTCGGTAGGCGTATCAGCAAGAAGCTCAATGCCATGG 25263
| || | |||||||||||| || || |||||||| ||| || || |||| ||||
Sbjct 222219 TGGAAGTTGGGGATGTGTGGGGAGTTGGCAGGCGTATTTCCAAAAAACTTAATGATATGG 222278
Query 25264 GAATCAAAACGGCTCTGGATCTCTCAGAGCAAAGC-ACCTGGATTATCCGCAAGCACTTT 25322
| || ||||| || || | | |||| || | || | | || || || ||||||
Sbjct 222279 GCATTAAAACTGCGTTGCAGTTGGCAGA-CACTCCGACGCCGCTGATACGAAAACACTTT 222337
Query 25323 AATGTGGTACTGGAACGAACGGTCCGGGAGCTGCGTGGCGAACCATGTCTGGATCTGGAG 25382
||| | ||| | || ||||| || |||| | ||||| || |||||| | || || ||
Sbjct 222338 AATATTGTATTAGAGCGAACCGTGAGGGAATTACGTGGGGAGCCATGTTTAGAACTCGAA 222397
Query 25383 GAGTTTGCGCCGGCAAAGCAGGAAATCGTCTGCAGCCGGTCATTCGGAGAACGCGTTACC 25442
|| |||||||| | || ||| | ||||||||| || ||||| || || ||||||| |
Sbjct 222398 GAATTTGCGCCAACCAAACAGCAGATCGTCTGCTCTCGTTCATTTGGTGACCGCGTTAGC 222457
Query 25443 GAATACGAACAGATGCGCCAGGCTATCTGCAGTTATGCTGCCCGTGGTGCTGAAAAACTA 25502
||||| || | |||||| | ||||||||||| |||| | || | || || || ||
Sbjct 222458 GAATATGACCTGATGCGTGAAGCTATCTGCAGCCATGCAGTGCGGGCAGCAGAGAAGCTT 222517
Query 25503 CGTGGTGAGCACCAGTATTGCCGTTTTATCTCGGCGTTCGTCAAGACGTCACCGTTCGCG 25562
|| ||||||| |||||| || || ||| || || |||||||| || ||||||||
Sbjct 222518 CGCGGTGAGCGCCAGTACTGTCGCCATATTTCAGCATTCGTCAAAACCAGCCCGTTCGCT 222577
Query 25563 CTTAACGAGCCGTATTACGGC--AATTGCGCGT-CAGTGAAGCTTCTCACACCCACGCAT 25619
| || || | |||||||||| || ||| || || || || | | ||| || ||
Sbjct 222578 ATGAATGAACTGTATTACGGCAAAACTGCAGGTACA---AAACTGCAGATACCTACTCAA 222634
Query 25620 GATTCCCGCGACATCATCAACGCTGTTGTTAAGTGCCTGGACAAAATCTGGCAGGATGGG 25679
|| |||||| || | ||||| |||||||||| ||||||||| |||||
Sbjct 222635 GACAGCCGCGATATAGTAGCCGCTGCCACGCAGTGCCTGGATGCAATCTGGCAAGATGGC 222694
Query 25680 CACCGCTACCAAAA 25693
||||| | |||||
Sbjct 222695 CACCGGTTTCAAAA 222708
Score = 120 bits (132), Expect = 1e-22
Identities = 251/367 (68%), Gaps = 18/367 (5%)
Strand=Plus/Plus
Query 38032 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 38091
||||||| ||||| ||||| |||||||| || | | || ||| ||| | || ||
Sbjct 187443 GGAGCGTCGCGTGGCCGATCTTGATGATGGGTATACACGGCTGGCAACAATGATACTGGA 187502
Query 38092 GGCTTATTCAGGTGCAGATCTAACCAAGCGACATTTTAAAGTGCTGCTTGCCATTCTGCG 38151
|| ||||||||||| | || ||||| || ||||| || ||||| || | | |
Sbjct 187503 GGAGCTGGCAGGTGCAGATTTCACTAAGCGTCAGTTTAAGGTTCTGCTGGCTGTGATCAG 187562
Query 38152 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 38211
|| || || ||||||||||| ||| | || | | ||||| ||| |||||
Sbjct 187563 GCTGACATACGGCTGGAATAAACCCCGTGACCGGATAGCTAACTCTCAGCTTTCTGAGAT 187622
Query 38212 TACAAAGTTACCCGTCAAACG-----GTGCAATGAG-GCCAAGTTAGAACTCGTCAGAAT 38265
| ||||||| || || ||||| ||| || | | | ||||| | | |||
Sbjct 187623 TGCAAAGTTGCCTGTAAAACGCGTGAGTGAAACGCGTGTGCAGTTAC------TGAAAAT 187676
Query 38266 GAA--TATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGG 38323
||| | ||||| || | | | | | ||| |||| || ||||| | || ||||||
Sbjct 187677 GAACGTTTTATCT-GCTGTAGGCCAG-ATGATTGGTATCAACAAAAATGTGTCCGAATGG 187734
Query 38324 AGTA-TCCCCCAAAATGAGGGAATACCCCTCAAAACAGGGGATAAAACATCCCTCAATTT 38382
||| |||| ||||| |||||| || |||||||| |||||||||||| ||||||||||||
Sbjct 187735 -GTACTCCCTCAAAAAGAGGGATTATCCCTCAAATCAGGGGATAAAAAATCCCTCAATTT 187793
Query 38383 GAGGGAG 38389
|||||
Sbjct 187794 AGGGGAG 187800
>seq7996
Length=49233
Score = 215 bits (238), Expect = 2e-51
Identities = 444/655 (68%), Gaps = 13/655 (2%)
Strand=Plus/Minus
Query 25245 AAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTGGATCTCTCAGAG----CAAAGCAC 25300
|| ||| | |||| ||||| || ||||| || ||| | || |||| ||| | |
Sbjct 29390 AAAAAGTTAAATGATATGGGGATTAAAACTGCCCTGCAGCTTGCAGATACCCCAACTCCC 29331
Query 25301 CTGGATTATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGGTCCGGGAGCTGCGTGG 25360
||| |||||||||||||| || | || || ||||| ||||| ||||||| |||||
Sbjct 29330 CTG----ATCCGCAAGCACTTCAACATTGTGCTTGAACGTACGGTAAGGGAGCTCCGTGG 29275
Query 25361 CGAACCATGTCTGGATCTGGAGGAGTTTGCGCCGGCAAAGCAGGAAATCGTCTGCAGCCG 25420
||||| ||| | || ||||| ||||| || ||| | || || ||||||| ||| |
Sbjct 29274 AGAACCGTGTTTAGAACTGGAAGAGTTCGCACCGACCAAACAACAAATCGTTTGCTCAAG 29215
Query 25421 GTCATTCGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGGCTATCTGCAGTTATGC 25480
||||||||| || ||||| | ||||| || | ||||||| | || || || ||| ||||
Sbjct 29214 GTCATTCGGTGATCGCGTATCAGAATATGATCTGATGCGCGAAGCGATATGTAGTCATGC 29155
Query 25481 TGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCCGTTTTATCTCGGCGTT 25540
| |||| ||| || ||||| || |||||||| || || ||||| |||||| || ||
Sbjct 29154 CGTGCGTGCTGCAGAGAAACTCCGGGGTGAGCATCAATACTGCCGGCATATCTCTGCATT 29095
Query 25541 CGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCAATTGCGCGTCAGTGAA 25600
| |||| || || || || | || || |||||||| || ||| | ||
Sbjct 29094 CATCAAAACAAGTCCTTTTGCTGTCAATGAAGTTTATTACGGTAAAACGGCGGGAACCAA 29035
Query 25601 GCTTCTCACACCCACGCATGATTCCCGCGACATCATCAACGCTGTTGTTAAGTGCCTGGA 25660
||||| | ||| || || || | | || ||| | || | ||| || |||||
Sbjct 29034 GCTTCAGATACCTACTCAGGACAGCAGGGATATCGTGGCTGCGGCAACTAAATGTCTGGA 28975
Query 25661 CAAAATCTGGCAGGATGGGCACCGCTACCA-AAAGGCTGGCATTATGCTCGGGGATTTCT 25719
||||||||| ||||| || |||| || ||| || ||| | ||||| |||||||| |
Sbjct 28974 TGCAATCTGGCAAGATGGCCATCGCTTTCAGAAATGC-GGCGTGATGCTGGGGGATTTTT 28916
Query 25720 TTAGCCAGGGTGTCGCACAGCTTAACCTGTTTGATGACAATGCCCCACGTGCTGGCAGCG 25779
|| ||||||||||| ||| | || || || || | || || | || |
Sbjct 28915 ACAGTCAGGGTGTCGCCCAGTTGGGTCTTTTCGACGAGTACCAGCCGCGCTCAAATAGTG 28856
Query 25780 AGAAGCTGATGGAGGTGCTGGATCAACTCAACGCCAAAGGCGGGAAGGGGACGCTGTACT 25839
|| |||| |||| ||| || ||| | |||| || | ||||||| ||| | ||| |
Sbjct 28855 AGCAGCTCATGGCGGTTCTCGATGGAATCAA--TCATA-GCGGGAAAGGGCGGGTGTGGT 28799
Query 25840 TCGCCGGGGAGGGCATTCAGCAACAGTGGGCGATGAAGAGAGAAATGCTTTCGCC 25894
|||| || ||||| | || || |||| |||||| | | ||||| || ||
Sbjct 28798 TCGCTGGCCAGGGCGTGCAAAAATCCTGGGAAATGAAGCGTCAGATGCTCTCTCC 28744
>seq19589
Length=24186
Score = 91.5 bits (100), Expect = 5e-14
Identities = 219/331 (66%), Gaps = 3/331 (1%)
Strand=Plus/Plus
Query 41724 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 41783
|||| ||| ||||||| |||||| | | || ||| |||||| |||||||||| |
Sbjct 12366 ACAAAGACCGCTGGCAGACGCCGATGGAAGTATTCACTGCGCTGGATCTTGAGTTTGGTT 12425
Query 41784 TCTGGCTGGATTCGGCAGCGAGCGATAAAAACGCTCTGTGCGCTCACTGGCTAACTGAGG 41843
| | || || | || | | | | ||||| || ||||| | | || || || |
Sbjct 12426 TTTATCTTGACGCCGCTGA---CCACCAGAACGCGCTTTGCGCCCGGTACCTGACAGAAG 12482
Query 41844 CCGACGACGCGCTCAATTCTGAGTGGATAAGCCACGGTGCAATCTGGAATAACCCACCGT 41903
|||| || ||||| | || ||| || |||| ||||||||| |||||| || |
Sbjct 12483 CCGATGATGCGCTGGCCACCGAATGGGAGAGTTACGGCGCAATCTGGTGTAACCCGCCAT 12542
Query 41904 ACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGACAGA 41963
||||| |||| ||||||||| || || ||||| ||||| ||| ||| |||
Sbjct 12543 ACAGCTCGATCACGCCGTGGGTTGAGAAGGCCGCCGAGCAATGCCGCGCCCAGTACCAGC 12602
Query 41964 CGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCAAGGATCTGGAGA 42023
|||| || ||||| |||| | |||| || || |||||| || ||| |
Sbjct 12603 CGGTGGTAATGCTGCTGCCCGCCGATACCTCAACAGGCTGGTTCTCGCTGGCGCTGACTA 12662
Query 42024 GTGTTGACGAAGTTCGCATCATCACTGATGG 42054
| |||||| | ||| | |||||||||||
Sbjct 12663 CAGCCGACGAAATCCGCTTTATCACTGATGG 12693
>seq34955
Length=5796
Score = 87.8 bits (96), Expect = 6e-13
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24310 GTACCGTGTGGCTTCCCAAGTCCCGCGGCAGACTACATTGAGCAGCGTATCGATCTTAAT 24369
|| || || ||||| || ||| ||| || ||| | ||| |||||||||||| ||
Sbjct 2997 GTGCCTTGCGGCTTTCCGTCTCCGGCGCAGGATTACGTGGAGTCGCGTATCGATCTGAAC 3056
Query 24370 GAGTTGCTCGTTTCTCATCCCAGCTCAACGTATTTTGTCAAAGCAACGGGTGATTCAATG 24429
| |||| || | ||| ||||| | || |||||| || | | || |||| |||
Sbjct 3057 AAACTGCTGATTGCCCATGCCAGCGCGACCTATTTTATCCGTGTTTCCGGCCATTCGATG 3116
Query 24430 ATTGATGCAGGCATCAACGACGGTGATCTGCTGGTGGTGGATAGCTCACGAACTGCTGAA 24489
| ||||| | ||||||| || ||| ||||||||||||| ||| | | || || |
Sbjct 3117 AGCGATGCCAACGTCAACGAAGGCGATTTGCTGGTGGTGGACAGCGCCCTGACAGCGGTT 3176
Query 24490 CACGGCGATATTGTTATTGCAGCCGTGGATGGGGAGTTTACTGTTAAA 24537
| |||||||| || | || || ||||| || || || || || |||
Sbjct 3177 GATGGCGATATCGTAGTGGCGGCGGTGGACGGTGAATTCACGGTAAAA 3224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156921227068024
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