Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq725 351 3e-92 seq7996 215 2e-51 seq19589 91.5 5e-14 seq34955 87.8 6e-13 >seq725 Length=236385 Score = 351 bits (388), Expect = 3e-92 Identities = 705/1034 (68%), Gaps = 21/1034 (2%) Strand=Plus/Plus Query 24669 ATGTTCGCACTTTGCGATGTTAATTCGTTTTACGCCAGTTGTGAAACTGTATTCAGACCA 24728 ||||| || ||| |||||| || || || ||||| || || ||||| || | || Sbjct 221687 ATGTTTGCCCTTGCCGATGTGAACAGCTTCTATGCCAGCTGCGAGACTGTGTTTCGTCCT 221746 Query 24729 GATTTGAGAGGGCGCCCGGTTGTCGTACTGTCGAACAATGATGGTTGTGTGATTGCGCGC 24788 ||||||| |||||| || || || || || |||||||| ||||| || ||||| ||| Sbjct 221747 GATTTGAAAGGGCGGCCAGTGGTTGTTCTTAGCAACAATGACGGTTGCGTAATTGCTCGC 221806 Query 24789 AGCACCGAGGCGAAGCAACTCGGTATCGCAATGGGTGAGCCATACTTCAAACAGAAAGAA 24848 || || || |||||| |||| || || ||||| || || | ||| || | || Sbjct 221807 AGTACAGAAGCGAAGAAACTAGGAATTAAGATGGGGGACCCGTTCTTTAAGATGCGTGAT 221866 Query 24849 CGCTTCCAGCAATTTGGTGTTGTTTGCTTCAGCAGTAATTATGAGCTTTACGCTGATATG 24908 | ||| | | | || ||| ||||| ||||| | ||| || || || ||| Sbjct 221867 CTCTTTGAACGTCACAAGATAGTGACCTTTAGCAGCAATTACGCGCTGTATGCAGACATG 221926 Query 24909 ---TCGAACCGGGTAATGACCACACTCGAGGAGATGTCGCCGCGGGTAGAAATTTACAGC 24965 |||| |||| ||||| | || || |||||||| ||||| ||||| Sbjct 221927 AGTTCGA---GGGTGATGACGGTGTTGGAAGAAATGTCGCCAGCCGTAGAGGTTTACTCA 221983 Query 24966 ATTGATGAGGCTTTTTGTGATCTG-ACGGGGATACGAAGCTGCCGGGATCTGACAGATTT 25024 ||||||||||| ||| | ||| | |||| || || |||| | ||||| ||| || Sbjct 221984 ATTGATGAGGCATTTATGAACCTGCAAGGGGTTAGTAAT-TGCCAGAATCTGGAAGAGTT 222042 Query 25025 CGGGCGCGAGATAAGAGCGACGGTCCTGAAGCGCACGCACCTGACTGTCGGCGTAGGCAT 25084 || |||||| | || || | ||| || | | || |||| || || || || || Sbjct 222043 TGGACGCGAGGTGAGGGCTAAGGTTCTTCGGTGGACTGGTTTGACCGTAGGTGTTGGAAT 222102 Query 25085 TGCCCAGACGAAAACCCTTGCCAAGCTGGCTAACCATGCTGCGAAAAAGTGG-CAGCGCC 25143 ||| | ||| || ||||| ||||| || |||||||||||||| || || ||| || Sbjct 222103 TGCACCGACTAAGACCCTAGCCAAACTAGCTAACCATGCTGCAAAGAAATGGACAA---- 222158 Query 25144 AGACCGGCGGGGTGGTTGACTTGTCGAACATTGACCGCCAGCGTCGGCTGCTGGCACTGA 25203 |||||||||| |||||||| |||| ||| | | |||||| |||| ||||| || Sbjct 222159 AGACCGGCGGTGTGGTTGATCTGTCTCTACTTGCCAGGCAGCGTAAGCTGATGGCATTGG 222218 Query 25204 TACCCGTAGAGGATGTGTGGGGTGTCGGTAGGCGTATCAGCAAGAAGCTCAATGCCATGG 25263 | || | |||||||||||| || || |||||||| ||| || || |||| |||| Sbjct 222219 TGGAAGTTGGGGATGTGTGGGGAGTTGGCAGGCGTATTTCCAAAAAACTTAATGATATGG 222278 Query 25264 GAATCAAAACGGCTCTGGATCTCTCAGAGCAAAGC-ACCTGGATTATCCGCAAGCACTTT 25322 | || ||||| || || | | |||| || | || | | || || || |||||| Sbjct 222279 GCATTAAAACTGCGTTGCAGTTGGCAGA-CACTCCGACGCCGCTGATACGAAAACACTTT 222337 Query 25323 AATGTGGTACTGGAACGAACGGTCCGGGAGCTGCGTGGCGAACCATGTCTGGATCTGGAG 25382 ||| | ||| | || ||||| || |||| | ||||| || |||||| | || || || Sbjct 222338 AATATTGTATTAGAGCGAACCGTGAGGGAATTACGTGGGGAGCCATGTTTAGAACTCGAA 222397 Query 25383 GAGTTTGCGCCGGCAAAGCAGGAAATCGTCTGCAGCCGGTCATTCGGAGAACGCGTTACC 25442 || |||||||| | || ||| | ||||||||| || ||||| || || ||||||| | Sbjct 222398 GAATTTGCGCCAACCAAACAGCAGATCGTCTGCTCTCGTTCATTTGGTGACCGCGTTAGC 222457 Query 25443 GAATACGAACAGATGCGCCAGGCTATCTGCAGTTATGCTGCCCGTGGTGCTGAAAAACTA 25502 ||||| || | |||||| | ||||||||||| |||| | || | || || || || Sbjct 222458 GAATATGACCTGATGCGTGAAGCTATCTGCAGCCATGCAGTGCGGGCAGCAGAGAAGCTT 222517 Query 25503 CGTGGTGAGCACCAGTATTGCCGTTTTATCTCGGCGTTCGTCAAGACGTCACCGTTCGCG 25562 || ||||||| |||||| || || ||| || || |||||||| || |||||||| Sbjct 222518 CGCGGTGAGCGCCAGTACTGTCGCCATATTTCAGCATTCGTCAAAACCAGCCCGTTCGCT 222577 Query 25563 CTTAACGAGCCGTATTACGGC--AATTGCGCGT-CAGTGAAGCTTCTCACACCCACGCAT 25619 | || || | |||||||||| || ||| || || || || | | ||| || || Sbjct 222578 ATGAATGAACTGTATTACGGCAAAACTGCAGGTACA---AAACTGCAGATACCTACTCAA 222634 Query 25620 GATTCCCGCGACATCATCAACGCTGTTGTTAAGTGCCTGGACAAAATCTGGCAGGATGGG 25679 || |||||| || | ||||| |||||||||| ||||||||| ||||| Sbjct 222635 GACAGCCGCGATATAGTAGCCGCTGCCACGCAGTGCCTGGATGCAATCTGGCAAGATGGC 222694 Query 25680 CACCGCTACCAAAA 25693 ||||| | ||||| Sbjct 222695 CACCGGTTTCAAAA 222708 Score = 120 bits (132), Expect = 1e-22 Identities = 251/367 (68%), Gaps = 18/367 (5%) Strand=Plus/Plus Query 38032 GGAGCGTAATGTGGCAGATCTCGATGATGGTTACGCCAGACTATCAAATATGCTGCTTGA 38091 ||||||| ||||| ||||| |||||||| || | | || ||| ||| | || || Sbjct 187443 GGAGCGTCGCGTGGCCGATCTTGATGATGGGTATACACGGCTGGCAACAATGATACTGGA 187502 Query 38092 GGCTTATTCAGGTGCAGATCTAACCAAGCGACATTTTAAAGTGCTGCTTGCCATTCTGCG 38151 || ||||||||||| | || ||||| || ||||| || ||||| || | | | Sbjct 187503 GGAGCTGGCAGGTGCAGATTTCACTAAGCGTCAGTTTAAGGTTCTGCTGGCTGTGATCAG 187562 Query 38152 TAAAACCTATGGGTGGAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGAT 38211 || || || ||||||||||| ||| | || | | ||||| ||| ||||| Sbjct 187563 GCTGACATACGGCTGGAATAAACCCCGTGACCGGATAGCTAACTCTCAGCTTTCTGAGAT 187622 Query 38212 TACAAAGTTACCCGTCAAACG-----GTGCAATGAG-GCCAAGTTAGAACTCGTCAGAAT 38265 | ||||||| || || ||||| ||| || | | | ||||| | | ||| Sbjct 187623 TGCAAAGTTGCCTGTAAAACGCGTGAGTGAAACGCGTGTGCAGTTAC------TGAAAAT 187676 Query 38266 GAA--TATTATCAAGCAGCAAGGCGGCATGTTTGGACCAAATAAAAACATCTCAGAATGG 38323 ||| | ||||| || | | | | | ||| |||| || ||||| | || |||||| Sbjct 187677 GAACGTTTTATCT-GCTGTAGGCCAG-ATGATTGGTATCAACAAAAATGTGTCCGAATGG 187734 Query 38324 AGTA-TCCCCCAAAATGAGGGAATACCCCTCAAAACAGGGGATAAAACATCCCTCAATTT 38382 ||| |||| ||||| |||||| || |||||||| |||||||||||| |||||||||||| Sbjct 187735 -GTACTCCCTCAAAAAGAGGGATTATCCCTCAAATCAGGGGATAAAAAATCCCTCAATTT 187793 Query 38383 GAGGGAG 38389 ||||| Sbjct 187794 AGGGGAG 187800 >seq7996 Length=49233 Score = 215 bits (238), Expect = 2e-51 Identities = 444/655 (68%), Gaps = 13/655 (2%) Strand=Plus/Minus Query 25245 AAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTGGATCTCTCAGAG----CAAAGCAC 25300 || ||| | |||| ||||| || ||||| || ||| | || |||| ||| | | Sbjct 29390 AAAAAGTTAAATGATATGGGGATTAAAACTGCCCTGCAGCTTGCAGATACCCCAACTCCC 29331 Query 25301 CTGGATTATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGGTCCGGGAGCTGCGTGG 25360 ||| |||||||||||||| || | || || ||||| ||||| ||||||| ||||| Sbjct 29330 CTG----ATCCGCAAGCACTTCAACATTGTGCTTGAACGTACGGTAAGGGAGCTCCGTGG 29275 Query 25361 CGAACCATGTCTGGATCTGGAGGAGTTTGCGCCGGCAAAGCAGGAAATCGTCTGCAGCCG 25420 ||||| ||| | || ||||| ||||| || ||| | || || ||||||| ||| | Sbjct 29274 AGAACCGTGTTTAGAACTGGAAGAGTTCGCACCGACCAAACAACAAATCGTTTGCTCAAG 29215 Query 25421 GTCATTCGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGGCTATCTGCAGTTATGC 25480 ||||||||| || ||||| | ||||| || | ||||||| | || || || ||| |||| Sbjct 29214 GTCATTCGGTGATCGCGTATCAGAATATGATCTGATGCGCGAAGCGATATGTAGTCATGC 29155 Query 25481 TGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCCGTTTTATCTCGGCGTT 25540 | |||| ||| || ||||| || |||||||| || || ||||| |||||| || || Sbjct 29154 CGTGCGTGCTGCAGAGAAACTCCGGGGTGAGCATCAATACTGCCGGCATATCTCTGCATT 29095 Query 25541 CGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCAATTGCGCGTCAGTGAA 25600 | |||| || || || || | || || |||||||| || ||| | || Sbjct 29094 CATCAAAACAAGTCCTTTTGCTGTCAATGAAGTTTATTACGGTAAAACGGCGGGAACCAA 29035 Query 25601 GCTTCTCACACCCACGCATGATTCCCGCGACATCATCAACGCTGTTGTTAAGTGCCTGGA 25660 ||||| | ||| || || || | | || ||| | || | ||| || ||||| Sbjct 29034 GCTTCAGATACCTACTCAGGACAGCAGGGATATCGTGGCTGCGGCAACTAAATGTCTGGA 28975 Query 25661 CAAAATCTGGCAGGATGGGCACCGCTACCA-AAAGGCTGGCATTATGCTCGGGGATTTCT 25719 ||||||||| ||||| || |||| || ||| || ||| | ||||| |||||||| | Sbjct 28974 TGCAATCTGGCAAGATGGCCATCGCTTTCAGAAATGC-GGCGTGATGCTGGGGGATTTTT 28916 Query 25720 TTAGCCAGGGTGTCGCACAGCTTAACCTGTTTGATGACAATGCCCCACGTGCTGGCAGCG 25779 || ||||||||||| ||| | || || || || | || || | || | Sbjct 28915 ACAGTCAGGGTGTCGCCCAGTTGGGTCTTTTCGACGAGTACCAGCCGCGCTCAAATAGTG 28856 Query 25780 AGAAGCTGATGGAGGTGCTGGATCAACTCAACGCCAAAGGCGGGAAGGGGACGCTGTACT 25839 || |||| |||| ||| || ||| | |||| || | ||||||| ||| | ||| | Sbjct 28855 AGCAGCTCATGGCGGTTCTCGATGGAATCAA--TCATA-GCGGGAAAGGGCGGGTGTGGT 28799 Query 25840 TCGCCGGGGAGGGCATTCAGCAACAGTGGGCGATGAAGAGAGAAATGCTTTCGCC 25894 |||| || ||||| | || || |||| |||||| | | ||||| || || Sbjct 28798 TCGCTGGCCAGGGCGTGCAAAAATCCTGGGAAATGAAGCGTCAGATGCTCTCTCC 28744 >seq19589 Length=24186 Score = 91.5 bits (100), Expect = 5e-14 Identities = 219/331 (66%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 41724 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 41783 |||| ||| ||||||| |||||| | | || ||| |||||| |||||||||| | Sbjct 12366 ACAAAGACCGCTGGCAGACGCCGATGGAAGTATTCACTGCGCTGGATCTTGAGTTTGGTT 12425 Query 41784 TCTGGCTGGATTCGGCAGCGAGCGATAAAAACGCTCTGTGCGCTCACTGGCTAACTGAGG 41843 | | || || | || | | | | ||||| || ||||| | | || || || | Sbjct 12426 TTTATCTTGACGCCGCTGA---CCACCAGAACGCGCTTTGCGCCCGGTACCTGACAGAAG 12482 Query 41844 CCGACGACGCGCTCAATTCTGAGTGGATAAGCCACGGTGCAATCTGGAATAACCCACCGT 41903 |||| || ||||| | || ||| || |||| ||||||||| |||||| || | Sbjct 12483 CCGATGATGCGCTGGCCACCGAATGGGAGAGTTACGGCGCAATCTGGTGTAACCCGCCAT 12542 Query 41904 ACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGACAGA 41963 ||||| |||| ||||||||| || || ||||| ||||| ||| ||| ||| Sbjct 12543 ACAGCTCGATCACGCCGTGGGTTGAGAAGGCCGCCGAGCAATGCCGCGCCCAGTACCAGC 12602 Query 41964 CGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCAAGGATCTGGAGA 42023 |||| || ||||| |||| | |||| || || |||||| || ||| | Sbjct 12603 CGGTGGTAATGCTGCTGCCCGCCGATACCTCAACAGGCTGGTTCTCGCTGGCGCTGACTA 12662 Query 42024 GTGTTGACGAAGTTCGCATCATCACTGATGG 42054 | |||||| | ||| | ||||||||||| Sbjct 12663 CAGCCGACGAAATCCGCTTTATCACTGATGG 12693 >seq34955 Length=5796 Score = 87.8 bits (96), Expect = 6e-13 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24310 GTACCGTGTGGCTTCCCAAGTCCCGCGGCAGACTACATTGAGCAGCGTATCGATCTTAAT 24369 || || || ||||| || ||| ||| || ||| | ||| |||||||||||| || Sbjct 2997 GTGCCTTGCGGCTTTCCGTCTCCGGCGCAGGATTACGTGGAGTCGCGTATCGATCTGAAC 3056 Query 24370 GAGTTGCTCGTTTCTCATCCCAGCTCAACGTATTTTGTCAAAGCAACGGGTGATTCAATG 24429 | |||| || | ||| ||||| | || |||||| || | | || |||| ||| Sbjct 3057 AAACTGCTGATTGCCCATGCCAGCGCGACCTATTTTATCCGTGTTTCCGGCCATTCGATG 3116 Query 24430 ATTGATGCAGGCATCAACGACGGTGATCTGCTGGTGGTGGATAGCTCACGAACTGCTGAA 24489 | ||||| | ||||||| || ||| ||||||||||||| ||| | | || || | Sbjct 3117 AGCGATGCCAACGTCAACGAAGGCGATTTGCTGGTGGTGGACAGCGCCCTGACAGCGGTT 3176 Query 24490 CACGGCGATATTGTTATTGCAGCCGTGGATGGGGAGTTTACTGTTAAA 24537 | |||||||| || | || || ||||| || || || || || ||| Sbjct 3177 GATGGCGATATCGTAGTGGCGGCGGTGGACGGTGAATTCACGGTAAAA 3224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156921227068024