Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq223 192 5e-44
seq8056 150 1e-31
seq48539 145 6e-30
seq8521 129 5e-25
seq15643 113 4e-20
>seq223
Length=511576
Score = 192 bits (212), Expect = 5e-44
Identities = 335/485 (69%), Gaps = 8/485 (2%)
Strand=Plus/Plus
Query 42956 ACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTCCAAGTGAGCAAAAA 43015
||| || ||||||||||| |||||||| || |||||||| || ||||| || ||| ||
Sbjct 113497 ACCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAA 113556
Query 43016 CTCACGTACTGAATCCACAAATATTTTACGCTTGTTTGCATCGCTGAAAAAATAAAACGG 43075
|| ||| || | || || | | ||||| ||| | | ||||| |||||
Sbjct 113557 TTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGG 113616
Query 43076 GTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAGATGAGGGTTAGCTTTTTT 43135
||| ||||| ||||| ||||| || ||||| | | ||| || | || | ||||||||
Sbjct 113617 GTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTT 113676
Query 43136 GGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTC---AT-TCCACGAGGAAACAC 43191
||||| | |||||||| || ||||| || ||| | || | ||| || |
Sbjct 113677 CAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTG----ACGC 113732
Query 43192 CTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTTTGAAGTCGCTTC 43251
||| || || |||| | || ||||| ||||||||||| | |||||| || || |
Sbjct 113733 CTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGAC 113792
Query 43252 GACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGATTTTAAACTGTCAT 43311
| |||||||| | ||| | || | ||||||||| ||| |||||||||||| |
Sbjct 113793 GCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGT 113852
Query 43312 TAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATGAGACAAATTGGGTA 43371
|||| ||||| |||||||| ||||| | || |||||||| | ||| | || || |
Sbjct 113853 TAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCG 113912
Query 43372 AAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTCTACAAAATAAGCGG 43431
||| | ||| | || | ||| ||||| || |||||||| || |||||||| |||
Sbjct 113913 CAGGGATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCGC 113972
Query 43432 CCACG 43436
| |||
Sbjct 113973 CAACG 113977
>seq8056
Length=34938
Score = 150 bits (166), Expect = 1e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||||| | ||| || || | |||||||||||||||||| || || ||||| |||| |
Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| ||||| || || || ||||| | ||| ||||| || ||
Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| |||||||||||||| || || |||| | ||| || || | ||| ||
Sbjct 32237 ATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACC 32178
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || |||| || ||||| ||||| || || || || |||||||||
Sbjct 32177 TCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATG 32130
Score = 141 bits (156), Expect = 7e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||||| | ||| | || ||||| ||||| || || || || |||||||||||||
Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| || ||||| || || || || || | ||| |||||||| || |||
Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| |||||||| ||||||||||| |||||| |||| | || || || | || ||
Sbjct 32009 ATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACC 31950
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
|| | |||| ||| || ||||| |||||||| || || ||||||||| ||
Sbjct 31949 TCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGATT 31899
>seq48539
Length=7100
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||||| | ||| | || || || ||||| ||||| ||||| ||||||||||||| |
Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| |||| | | || ||||| ||||| || || || |||| | ||| ||||| || ||
Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| |||||||| |||||||||||| || || |||| | || || || | |||||
Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| | ||| | ||| ||||| || || ||||| || || |||||||||
Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATG 6258
Score = 145 bits (160), Expect = 6e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || |||||||||||||||||||| |||||||| |||| | || | |||| |||
Sbjct 6695 ACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCCTCC 6636
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| ||||| || ||||| | ||| ||||| || || || ||||| || |||||
Sbjct 6635 AACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGG 6576
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| |||| | |||||||| | || ||||| ||||| | || ||
Sbjct 6575 ATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTCTTT 6516
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
||||| | || ||||| || |||||||||
Sbjct 6515 CCGGTAAGGGTCTTTACGAAGATCTGCATG 6486
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || |||||||| || || ||||| || ||||| || | | || | |||| |||
Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| |||||||| ||||| | ||| ||||| || ||||| ||||| || ||||||
Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| |||| | || || || | ||| ||||| | |||| ||||||
Sbjct 6803 ATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTG 6744
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || ||||| ||||||||
Sbjct 6743 CCAGTAAGGGTCTTGACAAAAATCTGCAT 6715
>seq8521
Length=40141
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || |||||||| || |||||||| || ||||| |||| | || | |||| |||
Sbjct 2911 ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCTTCC 2852
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| |||||||| ||||| | ||| ||||| || || || ||||| ||||| ||
Sbjct 2851 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 2792
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| | || | ||||| || | || || || || |||| || ||
Sbjct 2791 ATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTCTTC 2732
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||||| ||||| ||||||||
Sbjct 2731 CCGGTCAGGGTTTTGACAAAGATCTGCAT 2703
Score = 100 bits (110), Expect = 2e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||||| | ||| | || || |||||||||||||| || || || ||||| || | |
Sbjct 2017 CCTCCTCGGAGACGGAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAG 1958
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| || | ||||||||| ||||| ||||| | ||| ||||| || |||
Sbjct 1957 AGGGTACGACCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 1898
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400
|| ||||| || ||||| || || ||| ||| ||||
Sbjct 1897 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTC 1860
>seq15643
Length=27379
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||||| | || | ||||| ||||| || || || || || ||||||||||| |
Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| || | || || || || || ||||| | ||| ||||| || ||
Sbjct 12213 AGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGG 12154
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| |||||||| ||||| || || ||| ||| |||| | ||||||||| | || ||
Sbjct 12153 ATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACC 12094
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
||||| |||| ||||| || || | || || || || |||||||| ||
Sbjct 12093 TCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATTGT 12044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395945956353738
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