Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq223 192 5e-44 seq8056 150 1e-31 seq48539 145 6e-30 seq8521 129 5e-25 seq15643 113 4e-20 >seq223 Length=511576 Score = 192 bits (212), Expect = 5e-44 Identities = 335/485 (69%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 42956 ACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTCCAAGTGAGCAAAAA 43015 ||| || ||||||||||| |||||||| || |||||||| || ||||| || ||| || Sbjct 113497 ACCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAA 113556 Query 43016 CTCACGTACTGAATCCACAAATATTTTACGCTTGTTTGCATCGCTGAAAAAATAAAACGG 43075 || ||| || | || || | | ||||| ||| | | ||||| ||||| Sbjct 113557 TTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGG 113616 Query 43076 GTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAGATGAGGGTTAGCTTTTTT 43135 ||| ||||| ||||| ||||| || ||||| | | ||| || | || | |||||||| Sbjct 113617 GTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTT 113676 Query 43136 GGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTC---AT-TCCACGAGGAAACAC 43191 ||||| | |||||||| || ||||| || ||| | || | ||| || | Sbjct 113677 CAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTG----ACGC 113732 Query 43192 CTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTTTGAAGTCGCTTC 43251 ||| || || |||| | || ||||| ||||||||||| | |||||| || || | Sbjct 113733 CTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGAC 113792 Query 43252 GACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGATTTTAAACTGTCAT 43311 | |||||||| | ||| | || | ||||||||| ||| |||||||||||| | Sbjct 113793 GCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGT 113852 Query 43312 TAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATGAGACAAATTGGGTA 43371 |||| ||||| |||||||| ||||| | || |||||||| | ||| | || || | Sbjct 113853 TAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCG 113912 Query 43372 AAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTCTACAAAATAAGCGG 43431 ||| | ||| | || | ||| ||||| || |||||||| || |||||||| ||| Sbjct 113913 CAGGGATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCGC 113972 Query 43432 CCACG 43436 | ||| Sbjct 113973 CAACG 113977 >seq8056 Length=34938 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| || || | |||||||||||||||||| || || ||||| |||| | Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || || || ||||| | ||| ||||| || || Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| |||||||||||||| || || |||| | ||| || || | ||| || Sbjct 32237 ATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACC 32178 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| ||||| || || || || ||||||||| Sbjct 32177 TCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATG 32130 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || ||||| ||||| || || || || ||||||||||||| Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| || || || || || | ||| |||||||| || ||| Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||||||||| |||||| |||| | || || || | || || Sbjct 32009 ATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACC 31950 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || | |||| ||| || ||||| |||||||| || || ||||||||| || Sbjct 31949 TCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGATT 31899 >seq48539 Length=7100 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || || || ||||| ||||| ||||| ||||||||||||| | Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || ||||| ||||| || || || |||| | ||| ||||| || || Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||||||| || || |||| | || || || | ||||| Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||| | ||| ||||| || || ||||| || || ||||||||| Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATG 6258 Score = 145 bits (160), Expect = 6e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||||||||||||||| |||||||| |||| | || | |||| ||| Sbjct 6695 ACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCCTCC 6636 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| ||||| || ||||| | ||| ||||| || || || ||||| || ||||| Sbjct 6635 AACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGG 6576 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| |||| | |||||||| | || ||||| ||||| | || || Sbjct 6575 ATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTCTTT 6516 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || ||||| || ||||||||| Sbjct 6515 CCGGTAAGGGTCTTTACGAAGATCTGCATG 6486 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || ||||| || ||||| || | | || | |||| ||| Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| |||||||| ||||| | ||| ||||| || ||||| ||||| || |||||| Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| |||| | || || || | ||| ||||| | |||| |||||| Sbjct 6803 ATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTG 6744 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 6743 CCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 >seq8521 Length=40141 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || |||||||| || ||||| |||| | || | |||| ||| Sbjct 2911 ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCTTCC 2852 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| |||||||| ||||| | ||| ||||| || || || ||||| ||||| || Sbjct 2851 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 2792 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| || | || || || || |||| || || Sbjct 2791 ATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTCTTC 2732 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||||| ||||| |||||||| Sbjct 2731 CCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || || |||||||||||||| || || || ||||| || | | Sbjct 2017 CCTCCTCGGAGACGGAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAG 1958 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||||||| ||||| ||||| | ||| ||||| || ||| Sbjct 1957 AGGGTACGACCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 1898 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || ||||| || ||||| || || ||| ||| |||| Sbjct 1897 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTC 1860 >seq15643 Length=27379 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | || | ||||| ||||| || || || || || ||||||||||| | Sbjct 12273 CCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAA 12214 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | || || || || || ||||| | ||| ||||| || || Sbjct 12213 AGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGG 12154 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || || ||| ||| |||| | ||||||||| | || || Sbjct 12153 ATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACC 12094 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| |||| ||||| || || | || || || || |||||||| || Sbjct 12093 TCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATTGT 12044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395945956353738