Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq9405 185 6e-42 >seq9405 Length=40329 Score = 185 bits (204), Expect = 6e-42 Identities = 281/396 (71%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 69673 GCATGGTCTGCGTAACTCAACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAGCCAGAT 69732 ||| || ||||||||||| || ||| | || | ||||||| ||||| || ||||| Sbjct 35102 GCACGGCCTGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCCGAGACCTCTTCGCAGAT 35161 Query 69733 CACCAACTCCACCAATGGTATTGAGCCGCCCCGCGGCCCGGTATCCGTG--AAGTCTTCC 69790 | ||||| | ||||| ||||| ||||| || ||||||| |||| || || | || Sbjct 35162 CTCCAACGCTACCAACGGTATCGAGCCACCGCGCGGCCA--TATCAGTATTAAAGCGTCG 35219 Query 69791 AAAGACGGCATCGTGAAGATGGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTACGAG 69850 |||||||| ||| || |||||| || || | | | |||||||| |||||||| Sbjct 35220 AAAGACGGGATCCTGCGTCAGGTCGTGCCGGAGTATGAGCGTCTGAAAGATCAGTACGAA 35279 Query 69851 TACCTGTGGGATATGCCGGATAACCGCGGCTATCTG--ACTAAGGTGGCCATCATTCAGA 69908 ||||||||||||||| | ||| |||||||||| ||| ||| | | | || |||| Sbjct 35280 CTGCTGTGGGATATGCCGAACAACGACGGCTATCTGCAACT--GGTTGGCGTGATGCAGA 35337 Query 69909 AGTTCTTCGATCAGGCCATCTCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGGCG 69968 | ||| |||||||||| || || | ||||||||||| |||||| | |||||||| | Sbjct 35338 AATTCATCGATCAGGCGATTTCGTCCAACACCAACTATGACCCGTCGCGCTTCCCGAACA 35397 Query 69969 ACAAGGTTCCAATGATGAAGCTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGTGA 70028 || || || |||| || || || |||| ||||| || || | || || | Sbjct 35398 GTAAAGTGCCGATGAAACAGTTGTTGAAAGACTTGCTGACAGCCTACAAATTTGGCGTCA 35457 Query 70029 AGACGCTTTATTACCACAACACGCGTGATGGCGCTG 70064 | ||||| ||||| || ||||| || || || |||| Sbjct 35458 AAACGCTGTATTATCAGAACACCCGCGACGGTGCTG 35493 Score = 104 bits (114), Expect = 2e-17 Identities = 150/210 (71%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 70309 GAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTACCGT 70368 || || |||||| | |||||||| || ||||| || || | ||| ||||| ||| | | Sbjct 35679 GAGCCAATGTTCTTTGGCCAGTCGGTTAACGTTGCCCGTTTCGACCAGCAGAAGCA---T 35735 Query 70369 GA---CTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTC 70425 || ||| ||||| ||||| ||||| || || || ||||||||||| || ||||| | Sbjct 35736 GAAATCTTTGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCCGGAAGAGATT 35795 Query 70426 GACATTACCACTGACCGCATCGACTTCAATACCAAGCTGCAAGAGCACGAGCGCCATATT 70485 || || || ||||| ||||| || | | | ||| || ||||| || || Sbjct 35796 GATGTTTCCCGCGACCGTATCGATTTTCAGGC---GTTGCCGGATCACGAAAAACACATC 35852 Query 70486 TTCCTGAGCAACCTGCGTTACCAGACGCTG 70515 ||||||||||| ||| |||||||||||| Sbjct 35853 TTCCTGAGCAATCTGAAATACCAGACGCTG 35882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330154795845240