Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq223 116 3e-21
seq8056 114 1e-20
seq48539 109 4e-19
>seq223
Length=511576
Score = 116 bits (128), Expect = 3e-21
Identities = 317/483 (66%), Gaps = 2/483 (0%)
Strand=Plus/Minus
Query 27701 GTGGTGGCCGCTTACTTTGTCGAGTGGGGTGTGTATGGTAGAC-AGTATCCGGCCAACAA 27759
|| || | ||| || ||||| |||||||| ||||||||| | | | |||| | ||
Sbjct 113979 GTCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAA 113920
Query 27760 ACTACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGA 27819
| | || | || ||||||||| | |||||||||| ||| ||||||||||| ||
Sbjct 113919 A-TCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGA 113861
Query 27820 CGGTATCAACGATAGCCTAAAACAGATCCCCAATTCTTTTGAGGTCCTCCAAAAGTCATG 27879
||| || ||||| || ||||| || |||| ||| | | ||| | ||
Sbjct 113860 CGGGATTAACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTG 113801
Query 27880 CTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACC 27939
| || || |||| || ||||||||| |||| ||| |||| | ||
Sbjct 113800 TGCGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCC 113741
Query 27940 GCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGC 27999
|| | || || | | | || || || ||||| ||||| ||| |||||||
Sbjct 113740 TCAGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGC 113681
Query 28000 CATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAG 28059
| ||| | | |||| |||| || | || || || ||||| ||||| ||
Sbjct 113680 GCTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTC 113621
Query 28060 CGATCCATTCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAGTCTGTGCG 28119
|| || |||| ||| ||| | || ||| ||||| | ||| || |||| || ||
Sbjct 113620 AGACCCGTTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAA 113561
Query 28120 CGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGG 28179
||||| |||||||| ||||||||||||||||| || ||| | |||||||| ||||||||
Sbjct 113560 AGAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGG 113501
Query 28180 TGG 28182
||
Sbjct 113500 CGG 113498
>seq8056
Length=34938
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| || || ||| || || ||||||||||| || || | |||
Sbjct 32120 AGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGA 32061
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || || || || || || || || || || |||||||||| |||| || ||
Sbjct 32060 CCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCT 32001
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||| || |||||| | | | ||||| | ||| ||||||| ||
Sbjct 32000 TTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTG 31941
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| ||||| ||||||||||| || |||||||||||
Sbjct 31940 ATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903
>seq48539
Length=7100
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || ||| || ||||| ||||||||||| || || ||||
Sbjct 6476 AGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGG 6417
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| ||||||||||| || || || ||||| | ||| ||||| | || | || ||
Sbjct 6416 CCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCT 6357
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||| ||| || || | | | || || | ||||||||||| ||
Sbjct 6356 TTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTT 6297
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || ||||| ||||| || |||||||||||
Sbjct 6296 ATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| |||||||| ||||| || || || | || | || |||
Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|| ||||| || ||||| |||| | ||| ||||| | ||||| || |||||||| |
Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | ||||| | || || |||| || || |||||
Sbjct 6803 ATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTG 6744
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | || || ||||||||||||||
Sbjct 6743 CCAGTAAGGGTCTTGACAAAAATCTGCAT 6715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380618025971382
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |