Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq223 116 3e-21 seq8056 114 1e-20 seq48539 109 4e-19 >seq223 Length=511576 Score = 116 bits (128), Expect = 3e-21 Identities = 317/483 (66%), Gaps = 2/483 (0%) Strand=Plus/Minus Query 27701 GTGGTGGCCGCTTACTTTGTCGAGTGGGGTGTGTATGGTAGAC-AGTATCCGGCCAACAA 27759 || || | ||| || ||||| |||||||| ||||||||| | | | |||| | || Sbjct 113979 GTCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAA 113920 Query 27760 ACTACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGA 27819 | | || | || ||||||||| | |||||||||| ||| ||||||||||| || Sbjct 113919 A-TCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGA 113861 Query 27820 CGGTATCAACGATAGCCTAAAACAGATCCCCAATTCTTTTGAGGTCCTCCAAAAGTCATG 27879 ||| || ||||| || ||||| || |||| ||| | | ||| | || Sbjct 113860 CGGGATTAACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTG 113801 Query 27880 CTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACC 27939 | || || |||| || ||||||||| |||| ||| |||| | || Sbjct 113800 TGCGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCC 113741 Query 27940 GCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGC 27999 || | || || | | | || || || ||||| ||||| ||| ||||||| Sbjct 113740 TCAGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGC 113681 Query 28000 CATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAG 28059 | ||| | | |||| |||| || | || || || ||||| ||||| || Sbjct 113680 GCTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTC 113621 Query 28060 CGATCCATTCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAGTCTGTGCG 28119 || || |||| ||| ||| | || ||| ||||| | ||| || |||| || || Sbjct 113620 AGACCCGTTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAA 113561 Query 28120 CGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGG 28179 ||||| |||||||| ||||||||||||||||| || ||| | |||||||| |||||||| Sbjct 113560 AGAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGG 113501 Query 28180 TGG 28182 || Sbjct 113500 CGG 113498 >seq8056 Length=34938 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || ||||||||||| || || | ||| Sbjct 32120 AGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGA 32061 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || || || || || || || || |||||||||| |||| || || Sbjct 32060 CCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCT 32001 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || |||||| | | | ||||| | ||| ||||||| || Sbjct 32000 TTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTG 31941 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| ||||||||||| || ||||||||||| Sbjct 31940 ATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 >seq48539 Length=7100 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| || ||||| ||||||||||| || || |||| Sbjct 6476 AGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGG 6417 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || ||||| | ||| ||||| | || | || || Sbjct 6416 CCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCT 6357 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||| || || | | | || || | ||||||||||| || Sbjct 6356 TTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTT 6297 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| ||||| || ||||||||||| Sbjct 6296 ATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| |||||||| ||||| || || || | || | || ||| Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || ||||| |||| | ||| ||||| | ||||| || |||||||| | Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| | || || |||| || || ||||| Sbjct 6803 ATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTG 6744 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || |||||||||||||| Sbjct 6743 CCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380618025971382