Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq828 183 3e-41 seq785 134 2e-26 seq35 129 7e-25 seq9405 98.7 1e-15 >seq828 Length=218660 Score = 183 bits (202), Expect = 3e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 50964 CGTGAAGTTGATATTGAATTTCAACCCACTGTTAAAGTGGAAGGTGGACAACACTTAAAC 51023 |||||||| || ||| |||| || || || ||||||||||| || ||| | ||| Sbjct 42352 CGTGAAGTGCCAATGGAAGTTCAGCCGACCGTGCGCGTGGAAGGTGGTCAGCACCTGAAC 42293 Query 51024 GTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCTGTGAAGCATCCAGAAAAATACCCA 51083 || ||||| |||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 42292 GTTAACGTACTGCGTCGTGAAACACTGGAAGATGCGGTTAAACATCCTGAGAAATACCCA 42233 Query 51084 CAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTCAATTCACTGACTCCTGAACAA 51143 ||| | || || |||||||| |||||||| || |||||||| ||||||||| ||||||| Sbjct 42232 CAGCTGACTATTCGTGTGTCTGGCTATGCGGTACGTTTCAACTCACTGACTGCTGAACAG 42173 Query 51144 CAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGTCTATAATGGC 51189 ||||| ||||| || |||| || || || || || || |||| || Sbjct 42172 CAGCGTGACGTGATTACCCGTACTTTCACTGAAAGCCTGTAATCGC 42127 >seq785 Length=396209 Score = 134 bits (148), Expect = 2e-26 Identities = 993/1577 (63%), Gaps = 61/1577 (4%) Strand=Plus/Minus Query 153310 CAACGAGAACGCGAACAAAGAC-GCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTG 153368 ||||||||| || ||||||||| |||| | || ||| || ||||| || |||||||| | Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAGTGAT-CCCGACCCAGCGTGACCTGCTGGCGG 143096 Query 153369 GTATCGTAGCGAAACACTTCGCACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGC 153428 |||| || || || || | ||| | || ||| | || | | || |||| Sbjct 143095 GTATTGTCGCCAAGCATTACGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCGC 143036 Query 153429 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 153488 |||| ||| || |||||||||||||| || ||||| ||||||| || | Sbjct 143035 ATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTA 142976 Query 153489 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 153548 ||||| ||| | || | ||||| ||| || | | || ||||| |||||||| || | Sbjct 142975 ACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCGG 142916 Query 153549 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 153608 | || || | || || || || || || || | | || ||||| | ||| | Sbjct 142915 AAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCGC 142856 Query 153609 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCTAACGTTGATAAAGTGCTGGCTC 153668 || | ||| || |||||||| || ||| || | | || |||| ||||| | Sbjct 142855 AGGTCGCCAGCCATATTTACGGCGGCACGACCATTAACCGCATCGACGAAGTACTGGCGC 142796 Query 153669 CATATGTTCAAATGACATATG--ATAAGCACTTTAAAGATGCCAAAAAGTATCAAATCCC 153726 | | || | | || | |||| || | | |||| || ||| || || | Sbjct 142795 CGTTCGTC--ACCGCCAGCTTCAATAAACATCGTCAGACTGCCGAAGAGTGGCAGATTGC 142738 Query 153727 TCGTGATGTTCAGTATGCA-ATAGATAAAACTGAAAAGGATGTTTTCGACGCGTTTCAGT 153785 || | | | ||| | || | | ||||| |||| | ||||| || |||| Sbjct 142737 AGATGCGGATGGCTTTGCTCACAGCCGTACCGAAAAAGAGTGTTAT-GACGCCTTCCAGT 142679 Query 153786 CATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAACCCCGTTTGTTACAA 153845 | ||||| || || || || ||||| || || ||||| || || |||||||| || Sbjct 142678 CGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCCGTTTGTCACC- 142620 Query 153846 TTACGTTCGGTACTGGTCA-ATCCCGATGTGAA---CGCATGATCCAGAAAGCGATTCTG 153901 || ||| | || | || |||| || ||| ||| |||||||| || | |||||| Sbjct 142619 TTCGGTTTTGGCCTCGGCACATCC---TGGGAATCGCGCCTGATCCAGCAATCAATTCTG 142563 Query 153902 AAAAACCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCGAAACTGGTT 153961 ||||| ||| ||| ||||| ||| | | | || | |||||||| |||||||| Sbjct 142562 CGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCCAAAACTGGTG 142503 Query 153962 ATGTTCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCGCAACTATGACATCAAACAA 154021 | ||| | || | || | | | | | || |||||| |||||||| ||| Sbjct 142502 TTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAACTACGACATCAAGCAA 142443 Query 154022 CTTGCCCTGGAATGTGCTTCTAAACGCATGTACCCAGATATCATTAGTTCAGCTAACAAC 154081 || || |||||||| || || || |||||||| || ||| | | || | | | Sbjct 142442 CTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAATTATGATCAGGTG 142383 Query 154082 CGTGCTATT-ACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTTTCCTTAG 154140 ||| | | || ||||| |||| | | || ||||| || ||||||||||| | Sbjct 142382 -GTGAAAGTCACAGGTTC----GTTCAA--AACGCCGATGGGCTGCCGCAGTTTCCTGGG 142330 Query 154141 CGTGTGGCATGATGATAACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGTGTGGT 154200 ||||| |||| || || || | || | || || || ||||| | || ||| | Sbjct 142329 CGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCCGCAATAATATCGGCGTGAT 142273 Query 154201 GACAATCAACCTCCCGCGTATTGCTCTTGAAGCACANNNNNNNNNNNNNNNNNNNNNNNC 154260 | | || || ||||||||||| || ||||| | | Sbjct 142272 CAGCCTGAATCTGCCGCGTATTGCGCTGGAAGCGAACCGCGACGAAGCGG---------C 142222 Query 154261 TTTTTGGCGTATTCTTGATGATCGTCTGGGTTTGTGCTTTGAA-GCCCTGATGACTCGAA 154319 || ||| | || || || ||| || || || ||| || |||||||| || | Sbjct 142221 GTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTG-GCGAAGAAAGCGCTGATGACCCGCA 142163 Query 154320 TTGATAGTCTACGTGGTGTTAAAGCCAGTGTTGCGCCTATCCTGTACACAGAAGGTGCTT 154379 ||| |||| || | |||||| | || ||||| |||||||||| |||||||| | Sbjct 142162 TTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCGCCAATCCTGTACATGGAAGGTGCGT 142103 Query 154380 TTGGTGTCCGACTGAAACCGGATGATGAAATT-CTGGAACTGTTCAAAAATGGGCGTAGT 154438 ||||| || |||||| | || || || ||| | || | | ||||||||||| ||| Sbjct 142102 GCGGTGTGCGCCTGAAAGCTGACGACGATATTTCCGGCA-TCTTCAAAAATGGCCGTGCC 142044 Query 154439 TCTATCAGTCTGGGTTATATTGGACTGCACGAAACGCT---GTTGATGTTTGGC--TCAG 154493 || || || || || ||||| |||| ||||| | | |||| ||| ||| Sbjct 142043 TCGATTTCGCTCGGATACATTGGCGTGCATGAAACCATTAACGCGCTGTTCGGCAACCAG 141984 Query 154494 GCCAGCATCCATTCGATCGTATCGGC----TCCCAGAAATTAGGTCGA-TTGATCATTGA 154548 || || ||||| || |||| | | |||| | | ||| ||| | | Sbjct 141983 ACC--CACGTGTTCGA-CG--CCGGCCAGTTACGCGAAA--AAGCCGAGGCGATTGTGGC 141931 Query 154549 ATATCTCCGCGCTGCAACCGAAGCATGGAAGAAGAAAACTGGTTTTGGATTCAGTCTGTA 154608 ||| || ||||||||| ||||| | |||| || | || ||||| ||||| Sbjct 141930 TCGTCTGAAAGCGGCAACCGAAAGCTGGAAAGACGAAACGGGCTACGGTTTCAGCCTGTA 141871 Query 154609 -TTCAACCCCAGCGGAATCGCTCTGCCATCGCTTCTGTAAGCTGGACTTTGAGAAGTTCG 154667 || || |||| || | || ||| | ||||||||| ||||| | | |||| Sbjct 141870 CAGCACGCCGAGCGAAAAC-CTGTGCGACCGCTTCTGTCGTCTGGATAAAGCCGAATTCG 141812 Query 154668 GAAGCGTCAAGGGGATCACGGATAAAGGCTGGTACACAAACAGTTTCCACCTTGACGTTG 154727 | || || | || |||||||| | ||||| ||||| ||||| || ||||| | Sbjct 141811 GGCTGGTGGCCGGTGTGACTGATAAAGGTTACTACACCAACAGCTTCCATCTGGACGTCG 141752 Query 154728 ATCGCAAGGTGACACCGTTCGAGAAAATCGACTATGAAGCCGATTAT-CATTACATCGCT 154786 | ||||| | |||| ||| ||| |||||| ||||| ||| | || || Sbjct 141751 AGAAGAAGGTAAATCCGTACGAAAAACTCGACTTCGAAGCGCCGTATCCGCCACTCAGCA 141692 Query 154787 ACTGCTGGTCATATCAGTTATGTTGAATTCCCTGATATGAAAAACAACCTGCAAGCCCTG 154846 || || ||| ||| | |||| |||| |||| | || || |||| ||| |||| ||| Sbjct 141691 ACGGC-GGTTTCATCTGCTATGGCGAATACCCTAACCTGCAACACAATCTGAAAGCGCTG 141633 Query 154847 GAAAAAGTCTGGGATTA 154863 ||| | || |||||||| Sbjct 141632 GAAGACGTGTGGGATTA 141616 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 49479 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAA 49538 ||||||||||||| | ||||||||||| | ||||||||||||| ||| |||||||||| Sbjct 187972 CGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAA 187913 Query 49539 GTCCAGCAGGGGCCACCAAAT 49559 |||||||| |||||||||||| Sbjct 187912 GTCCAGCAAGGGCCACCAAAT 187892 >seq35 Length=455554 Score = 129 bits (142), Expect = 7e-25 Identities = 206/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 39582 GACCAGATTGCAAAAATCATCGAACAACTGAA-AACCACACCAGACGATCGCG--GGATC 39638 |||||| | ||||| | | ||||| ||||| || || || ||| ||||| | || Sbjct 112455 GACCAGCTGGCAAATGTGGTTGAACAGCTGAAGAAAGAC-CCTGAC--TCGCGTCGTATT 112511 Query 39639 ATCGTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCTCTGCGTCCGTGTCACTGT 39698 ||||| || ||||||||| | || |||||| | ||||| ||| || || ||| | Sbjct 112512 ATCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCACGCT 112571 Query 39699 TTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTT 39758 |||||||||||| || | |||||||| |||| ||| ||| ||||| ||| Sbjct 112572 TTCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCATGC 112631 Query 39759 GATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATATTATC 39818 ||| ||||| | || |||||||||||||||||| |||||| || ||| |||||| || Sbjct 112632 GATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATGATG 112691 Query 39819 GCTGATATTTGCGGGTATGAAGTGGGCGATCTGGTTTGGACTGGCGGTGAT 39869 || | |||| ||||||||| ||| | || ||||| || || ||| Sbjct 112692 GCGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742 >seq9405 Length=40329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 272/412 (66%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 41902 ATTAAAAAACACGGTTTGCGTAACTCAACGCTTTCTGCTTTAATGCCTTGTGAAAGTAGC 41961 || |||| ||||| |||||||||| ||||| ||||| | ||||| | || | Sbjct 35094 ATCAAAACGCACGGCCTGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCCGAGACCTCT 35153 Query 41962 TCACAGGTGAGTAACTCAACCAACGGGATTGAACCTCCGCGCGGCCCTGTGAGTGTGAAA 42021 || ||| | ||| | |||||||| || || || |||||||||| | | ||| | ||| Sbjct 35154 TCGCAGATCTCCAACGCTACCAACGGTATCGAGCCACCGCGCGGCCATATCAGTATTAAA 35213 Query 42022 TCTTCGAAAGAAGGT-TCATTCAATCAGGTAGTACCAAACCAGAATAATCAGATTGACTT 42080 | |||||||| || || | | |||||| || || | | | || || || Sbjct 35214 GCGTCGAAAGACGGGATCCTGCG-TCAGGTCGTGCCGGAGTATGAGCGTCTGAAAGATCA 35272 Query 42081 CTATGATTATCTCTGGACAATGGCAAAACGTGGAAACAAAGGTTATCTGTCTCATGTAGC 42140 || || || ||| ||| | || ||| | || |||||| | || | Sbjct 35273 GTACGAACTGCTGTGGGATATGCCGAAC------AACGACGGCTATCTGCAACTGGTTGG 35326 Query 42141 GGTTATGCAGAAGTTTGTTGATCAGGCTATCTCTGCAAACACAAACTATGATCCGGCCAA 42200 || |||||||| || | |||||||| || || | ||||| |||||||| ||| | Sbjct 35327 CGTGATGCAGAAATTCATCGATCAGGCGATTTCGTCCAACACCAACTATGACCCGTCGCG 35386 Query 42201 CTTCCCAGATGGTAAAGTGAAATCTGAAATCATCCTTGAA-GATCTGCTGTATGCAAACT 42259 |||||| | |||||||| ||||| | ||||| || ||||| || || Sbjct 35387 CTTCCCGAACAGTAAAGTGCCGA-TGAAACAGTTGTTGAAAGACTTGCTGACAGCCTACA 35445 Query 42260 ATTTCGGCATCAAAACGCTGTACTACCACAACACCCGTGACGGTGCAGGTGA 42311 | || ||| ||||||||||||| || || |||||||| |||||||| | ||| Sbjct 35446 AATTTGGCGTCAAAACGCTGTATTATCAGAACACCCGCGACGGTGCTGATGA 35497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569599080655920