Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq19589 114 5e-21 seq785 114 5e-21 >seq19589 Length=24186 Score = 114 bits (126), Expect = 5e-21 Identities = 293/446 (66%), Gaps = 0/446 (0%) Strand=Plus/Plus Query 29099 ATCCTCGACCAGTTTCTGGATGAAAAGGAAGGCAACCACACCACGGCATACCGTGATGGT 29158 ||||||| || ||||| |||||||||||||| || ||||| || | ||||| Sbjct 19197 ATCCTCGGACAATTTCTTGATGAAAAGGAAGGTAATAGTCTGACGGCTTATCAGGATGGC 19256 Query 29159 GCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCT 29218 | ||| |||||||| || ||||| || | ||||| | ||||| |||||| Sbjct 19257 GTGGGGATCTGGACAATTTGCCGCGGCGTTACCCGCATTGATGGGCGCCCTGTTTACAAA 19316 Query 29219 GGCATGAAGCTGTCGAAGGGGAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCG 29278 ||||||| || | || ||| |||| | || ||| | || |||||||| Sbjct 19317 GGCATGACATTGACTGCGGCGAAGTGCGCAGATGTGAACAAATTGGAATCCAATAAGGCG 19376 Query 29279 CTGGCATGGGTGGAGAAAAACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGTATT 29338 | | ||||| | | || ||| || | |||||| | || || | || ||||| Sbjct 19377 ATAGAGTGGGTTAAAACTAATGTCACTGTCACGCTGACTCAGCCGCAAATTGCCGGTATC 19436 Query 29339 GCGTCATTCTGTCCTTACAACATTGGCCCAGGTAAGTGTTTCCCGTCGACGTTTTATAAA 29398 || ||||| || || ||||||||||| || | || || ||| | || ||||| || ||| Sbjct 19437 GCATCATTTTGCCCCTACAACATTGGACCGGCGAAATGCTTCACTTCAACGTTCTACAAA 19496 Query 29399 CGAATTAATGCAGGAGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGAC 29458 | | ||||| |||||| | |||||||| | | || ||||| | || Sbjct 19497 AAACTAAATGCCGGAGATAAACGTGGTGCCTGTGCTGAAATAAAGCGGTGGGTACGCGAT 19556 Query 29459 GGTGGCAGAGACTGCCGTATTCGCTCAAATAACTGTTATGGTCAGGTCTCACGGCGTGAC 29518 | ||| | ||||||| | || |||||| || | ||| ||||| ||| ||||| Sbjct 19557 GATGGGAAAGACTGCAATGCCCGGGAAAATAATTGCTTTGGGCAGGTGATACGCCGTGAT 19616 Query 29519 CAGGAGAGCGCGCTGGCGTGCTGGGG 29544 ||||| |||| || | |||||||| Sbjct 19617 CAGGAAAGCGAACTAACATGCTGGGG 19642 >seq785 Length=396209 Score = 114 bits (126), Expect = 5e-21 Identities = 89/102 (87%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 24074 TACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATA 24131 |||||| || |||| || || ||||||||||||||||| ||| ||||| |||||||||| Sbjct 187992 TACCGT-ATAATCCCGCACCTCGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATA 187934 Query 24132 ATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 24173 ||||| |||||||||||||| ||||||||||||||||| || Sbjct 187933 ATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAAT 187892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193393789869380