Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq223 100 7e-17 seq19589 95.1 3e-15 seq25848 82.4 2e-11 >seq223 Length=511576 Score = 100 bits (110), Expect = 7e-17 Identities = 229/345 (66%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 4173 GCCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATC 4232 ||| || ||||| |||||||| || || ||| |||| ||||||||| ||| | | || Sbjct 459543 GCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAACGACGACTTCGGTGGTGTATTTTTC 459602 Query 4233 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGA 4292 || ||||| |||||| | || ||| | ||||| | || |||| ||| Sbjct 459603 AACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCCTTCGATGTAGACCTGAGA 459662 Query 4293 GCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTG 4352 ||||| ||| ||||||| || | |||||| | ||| ||| || ||||| ||||| Sbjct 459663 ACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGTG 459722 Query 4353 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 4412 ||| ||||| | || || ||||| || || || |||||||| || ||||| || Sbjct 459723 CCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGC 459782 Query 4413 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC 4472 | || | ||| |||| || || || || | || ||| || || || || Sbjct 459783 CAGAGTGATGTTGGCAACCGCGCCGCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGTCC 459842 Query 4473 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 || ||| | | || || || |||||||||||||| ||||| Sbjct 459843 CAGATTACCGACGAGAATAACTTTGTTTACGCCTCTGCTGGCCAT 459887 >seq19589 Length=24186 Score = 95.1 bits (104), Expect = 3e-15 Identities = 220/331 (66%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 12375 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 12434 |||| ||| ||||||| |||||| | | || ||| |||||| |||||||||| | Sbjct 12366 ACAAAGACCGCTGGCAGACGCCGATGGAAGTATTCACTGCGCTGGATCTTGAGTTTGGTT 12425 Query 12435 TCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTCTGTGTGCTCACTGGCTAACTGAGG 12494 | | || || | || | | || | || || || || || | | || || || | Sbjct 12426 TTTATCTTGACGCCGCTGA---CCACCAGAACGCGCTTTGCGCCCGGTACCTGACAGAAG 12482 Query 12495 CCGACGACGCGCTCAATTCTGAGTGGGTAAGCCACGGTGCAATCTGGAATAACCCACCGT 12554 |||| || ||||| | || |||| || |||| ||||||||| |||||| || | Sbjct 12483 CCGATGATGCGCTGGCCACCGAATGGGAGAGTTACGGCGCAATCTGGTGTAACCCGCCAT 12542 Query 12555 ACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGACAGA 12614 ||||| |||| ||||||||| || || ||||| ||||| ||| ||| ||| Sbjct 12543 ACAGCTCGATCACGCCGTGGGTTGAGAAGGCCGCCGAGCAATGCCGCGCCCAGTACCAGC 12602 Query 12615 CGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCAAGGCTCTGGAGA 12674 |||| || ||||| |||| | |||| || || |||||| ||| ||| | Sbjct 12603 CGGTGGTAATGCTGCTGCCCGCCGATACCTCAACAGGCTGGTTCTCGCTGGCGCTGACTA 12662 Query 12675 GTGTTGACGAAGTTCGCATCATCACTGATGG 12705 | |||||| | ||| | ||||||||||| Sbjct 12663 CAGCCGACGAAATCCGCTTTATCACTGATGG 12693 >seq25848 Length=116905 Score = 82.4 bits (90), Expect = 2e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 4245 ATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGAGCCTTTTCGCAG 4304 |||||||||||| | ||| ||| | ||||| | || || | | ||| || ||| Sbjct 108252 ATCCTGCCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGCGCCCTTGGTCAG 108193 Query 4305 ATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCACTCCGTCTG 4364 ||||| | ||||||||| ||||| || ||| || ||||||||||||||||| || | Sbjct 108192 GTATTCACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTGCCACTCGGTTTT 108133 Query 4365 CTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 4412 || ||||| || || || |||||||| | ||| ||||| || Sbjct 108132 TTCGCGCTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGC 108085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126641997671264