Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq785 104 3e-17 seq9298 87.8 3e-12 seq6488 86.0 9e-12 seq8998 84.2 3e-11 >seq785 Length=396209 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 ||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||| || Sbjct 187971 GGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAAG 187912 Query 198995 TCCAGTAGGGGCCACCAGAT 199014 ||||| | ||||||||| || Sbjct 187911 TCCAGCAAGGGCCACCAAAT 187892 >seq9298 Length=187188 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 199780 TTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCG 199838 ||||| || |||||||| |||||||||| ||||||||||||||| ||||| ||||||| Sbjct 136191 TTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCG 136250 Query 199839 AGTCCTGTATCACCGACCAC 199858 | |||| | || |||||||| Sbjct 136251 AATCCTCTCTCGCCGACCAC 136270 >seq6488 Length=277817 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 159849 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 159908 Query 199840 GTCCTGTATCACCGACCAC 199858 |||| | || |||||||| Sbjct 159909 ATCCTCTCTCGCCGACCAC 159927 >seq8998 Length=49917 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/128 (76%), Gaps = 12/128 (9%) Strand=Plus/Minus Query 198620 TAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGAATCCAGTA 198679 |||||||||||| ||||||| || ||| | ||||||| ||||||||||| || Sbjct 24746 TAGCTCAGTTGGTTAGAGCACATCACTCATAATGATGGGGTCACAGGTTCGAATCCCGT- 24688 Query 198680 CGGCGC-ACCA---------CGGGATGTGGTGAAATTGGCAGACACACTAGATTTAGGTT 198729 || || |||| ||||| |||| |||||||| |||| ||||||||||||||| Sbjct 24687 CGTAGCCACCATCTTTTTTGCGGGA-GTGGCGAAATTGGTAGACGCACTAGATTTAGGTT 24629 Query 198730 CTAGCGCC 198737 |||||||| Sbjct 24628 CTAGCGCC 24621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740811638227920