Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq9360 226 9e-55 >seq9360 Length=49093 Score = 226 bits (250), Expect = 9e-55 Identities = 522/780 (67%), Gaps = 22/780 (3%) Strand=Plus/Minus Query 8431 TTTGATGGTCGCCCCGCTGTTTTTGATGAGGCGGATTTTCCGGCAGTTGCCGTTTATCTC 8490 || || || || |||| || |||| ||| ||||| ||||| ||||| || ||||| Sbjct 39507 TTCGACGGGCGGCCCGTATTTCTTGAAGAGCAAGATTTGCCGGCCGTTGCAGTGTATCTG 39448 Query 8491 ACCGGCGCTGAATACACGGGCGAAGAGCTGGACAGCGATACCTGGCAGGCGGAGCTGCAT 8550 | | || || ||||| ||||| |||||| || | ||||||||| | | |||| Sbjct 39447 TCGGATGCCGAGTACACCGGCGACACGCTGGATGAAGACAGCTGGCAGGCCGTGTTGCAC 39388 Query 8551 ATCGAAGTTTTCCTGCCTGCTCAGGTGCCGGATTCAGAGC--TGGATGCGTGGATGGAGT 8608 | |||||||| ||| || || || ||| || | ||||| ||||||||| Sbjct 39387 GTTGAAGTTTTTCTGAAAGCAGTAAACCCAGA--CAGCGCACTTGATGCCTGGATGGAGG 39330 Query 8609 CCCGGATTTATCCGGTGATGAGCGA-TATCCCGGCACTGTCAGATTTGATC---ACCAGT 8664 | ||||| |||| ||| ||| || || || | || || ||| |||| | Sbjct 39329 AAAAAGTCTATCCCTCGATG-GCGTCTATACCTGCCTTGGCTGACTTAATCGAAACCATT 39271 Query 8665 ATGGTGGCCAGCGGCTATGACTACCGGCGCGACGATGATGCGGGCTTGTGGAGTTCAGCC 8724 | | ||| ||||||||||| | ||| || ||||| || | |||| |||| | Sbjct 39270 ACACCG--CAG-GGCTATGACTATCAGCGTGATGATGAAATGGCCACGTGGGGTTCGGTA 39214 Query 8725 GATCTGACTTATGTCATTACCTATGAAATGTGAGGA--CGCTATGCCTGTACCAAATCCT 8782 |||||| | ||| | | || ||| ||||| |||| ||||||| |||||||| Sbjct 39213 GATCTGTCCTATTCCCTCACTTATTCAATGTAAGGATTTTTTATGCCTACTCCAAATCCA 39154 Query 8783 ACAATGCCGGTGAAAGGTGCCGGGACCACCCTGTGGGTTTATAAGGGGAGCGGTGACCCT 8842 |||||| |||||||| ||||| || || ||| | || | || ||| | || Sbjct 39153 CTGGCGCCGGTTAAAGGTGCAGGGACAACGCTCTGGTTGTACACCGGTTCGGGTAATGCT 39094 Query 8843 TACGCGAATCCGCTTTCAGACGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGACG 8902 | || || ||||| ||||| |||||||| || || || ||| | || ||||| || Sbjct 39093 TTTGCTAACCCGCTCTCAGATATTGACTGGAACCGCCTTGCTAAAATCAAGGACCTCACT 39034 Query 8903 CCCGGCGAACTGACCGCTGAGTCCTATGACGACAGCTATCTCGATGATGAAGATGCAGAC 8962 || || || |||| || |||||||| || || | ||||| || |||||||| || ||| Sbjct 39033 CCGGGTGAGATGACTGCGGAGTCCTACGATGATACTTATCTGGACGATGAAGACGCGGAC 38974 Query 8963 TGGACTGCGACCGGGCAGGGGCAGAAATCTGCCGGAGATACCAGCTTCACGCTGGCGTGG 9022 |||| ||| |||| |||||| |||||||| || |||||| || || || || ||| Sbjct 38973 TGGAATGCTACCGCTCAGGGGGCAAAATCTGCAGGTGATACCTCGTTTACACTCGCATGG 38914 Query 9023 ATGCCCGGAGAGCAGGGGCANNNNNNNNNNNNNNCGTGGTTTAATGAAGGCGATACCCGT 9082 | |||||| || |||| || | ||||||| ||| ||| | || Sbjct 38913 AAGCCCGGTGAAGAGGGACAGAAAGACCTGGTCGCATGGTTTATTGATGGC----TCAGT 38858 Query 9083 GC-CTAT---AAAATCCGCTTCCCGAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAG 9138 | |||| |||||| | ||| |||||||| || || || || || |||||| ||| Sbjct 38857 TCGCTATTACAAAATCAAATACCCAAACGGCACTGTTGACGTTTTTCGCGGCTGGTGCAG 38798 Query 9139 CAGTATCGGTAAGGCGGTGACGGCGAAGGAAGTGATCACCCGCACGGTGAAAGTCACCAA 9198 || | ||||| ||| | | || || ||||| |||||||| || | |||| | ||||| Sbjct 38797 TAGCCTGGGTAAAGCGATCCCTGCAAAAGAAGTCATCACCCGTACAGCGAAAATTACCAA 38738 Score = 165 bits (182), Expect = 2e-36 Identities = 213/294 (72%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 11765 CATGCTGCCCTGCTGACGCTTCAGGCAGAACTCCGGACGCTGGAGAAGCATGCCGGAGCA 11824 || |||| ||||| |||||||||||| | || |||||| ||| ||||| || | | | Sbjct 35686 CAGGCTGAACTGCTTACGCTTCAGGCACAGCTAAAGACGCTTGAGCAGCATACCAGCGTA 35627 Query 11825 AATGAGAAAATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTA 11884 || || ||||| |||| || | |||| ||||| |||| || | ||| ||| | ||| Sbjct 35626 AACGATGTTATCAGTAAGCAACGGCAGGATCTGTGGCAGGCTGAAAATCAATTCACCGTA 35567 Query 11885 CTGGAGGAGGCGGCGCAACGTCGCCAGCTGTCTGCACAGGAGAAATCCCTGCTGGCGCAT 11944 ||| ||||||| || || |||||||| | || ||||| ||||| ||||||||||| Sbjct 35566 CTGCAGGAGGCTGCTGGGCGACGCCAGCTCACGGCTCAGGAAAAATCACTGCTGGCGCAC 35507 Query 11945 AAAGATGAGACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTTACGTAT 12004 || ||||| ||||| ||||||||||| || ||||| | || || || ||||| | | Sbjct 35506 AAGGATGAAACGCTCGAGTACAAACGGCAACTGGCCGATCTGGGTGATAAGGTCGCCAGT 35447 Query 12005 CAGGAGCGCCTGAACGCGCTGGCGCAGCAGGCGGATAAATTCGCACAGCAGCAA 12058 ||| | |||||| || ||| | ||||| | || || | |||||| ||| Sbjct 35446 CAGCAAAAGCTGAACCAACTTGCGGATCAGGCCGCAAAGTTTGAACAGCAACAA 35393 Score = 134 bits (148), Expect = 4e-27 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 9902 GCAGAGCCTGTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGG 9961 |||||||||||| |||||| |||| | | | | ||||| | ||| |||||| |||| Sbjct 38026 GCAGAGCCTGTTACTGCGGAAAAGCCCTTGCCAGCGAGCTAAAGTTTATCCTGAATCTGG 37967 Query 9962 CGCGTGAGATGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGT 10021 |||| ||| | || || ||||||||||| |||||||| || || ||| | ||||| ||| Sbjct 37966 CGCGCGAGTTTGGACGGCCCGACTGGCGCGCCATGCTGGCTGGAATGACTTCCACTGAGC 37907 Query 10022 ATGCCGACTGGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGC 10081 | ||||||||||| || || | ||||||||||| || | || ||| ||| || Sbjct 37906 TGGGCGACTGGCACCAGTTCTATCGGGAGCATTATTTTCAGGACGCTCAGCTCGATGCGC 37847 Query 10082 ACTTTTCCGGGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 10133 | || ||||||||| || || | || || || ||| |||||||||| Sbjct 37846 ATTTCTCCGGGCTGCTTTATTCCATCTCCACACTCTTCTTCCGCGATCCGGA 37795 Score = 116 bits (128), Expect = 1e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 12574 CGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGA 12633 ||||||||| |||||||| || || ||||||||||||| || ||||| ||||| || || Sbjct 34883 CGGCGGCAAGTATGAGCCTGCCGGTGTTGTTCACCGTGGAGAATTTGTTTTCACAAAAGA 34824 Query 12634 GGCAACCAGCCGGATTGGCGTGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGG 12693 |||||||||| || || || ||||| || || ||||||||||| |||||||| || Sbjct 34823 ATCAACCAGCCGAATCGGTGTAACTAATCTCTATCGTCTGATGCGCGGTTATGCCACGGG 34764 Query 12694 CGGT 12697 |||| Sbjct 34763 CGGT 34760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150443326460016