Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_019927.1
Length=47611
Score E
Sequences producing significant alignments: (Bits) Value
seq725 518 1e-142
seq6760 320 5e-83
seq28451 87.8 5e-13
>seq725
Length=236385
Score = 518 bits (574), Expect = 1e-142
Identities = 1158/1711 (68%), Gaps = 58/1711 (3%)
Strand=Plus/Plus
Query 40167 CATTGGTATTGCCATCACCACTCACAACCGGCCCGATGTACTGGCGCGCGCACTTGAGCA 40226
||||||||| || |||||||| ||||| ||||| || || || || | | | ||
Sbjct 201734 CATTGGTATCGCGATCACCACCCACAATCGGCCGGAAGTTCTCGCAAAATCCATAGCTCA 201793
Query 40227 GCACCAGAAGCATCTACCACCCGGAGCGGTGGTCGTGATTGTCGATGATGGCTCGGTGCC 40286
|||| ||||| |||| | || || |||| | | |||||||||| || | |||
Sbjct 201794 GCACATCAAGCACTTACCGGCTGGCGCAAAGGTCATCGTAATCGATGATGGTTCAGCGCC 201853
Query 40287 TGCTGCCGTAGCACAAGAATCTGCACGGCTCATCCGGCATGAGCAATCACAGGGTATCGT 40346
|| || | || | |||| | | ||||| || ||| ||| | || || ||
Sbjct 201854 AGCAGCTGCCGCGCCAGAAGGTATCGAAATTATCCGTCAGGAGGTATCGCTCGGAATTGT 201913
Query 40347 GGCATCTAAAAACGCCAGCATTGAAGCCCTGATAGATGCCGGTTGCGAACACATCTTCCT 40406
||||| ||||| ||| | || || ||||| ||||| ||||| || || | || ||
Sbjct 201914 TGCATCAAAAAATCGCAGTCTCGAGGCTCTGATCGATGCTGGTTGTGAGCAGCTGTTTCT 201973
Query 40407 GTGGGATGATGACGCGTGGCCGATTGCTGATGGCTGGCATATTCCGTATATCGAGTCTCC 40466
|||||| ||||| || | ||||| ||| | |||||| |||| || ||||| || ||
Sbjct 201974 GTGGGACGATGATGCTTATCCGATATATGACGACTGGCACGTTCCTTACATCGAATCCCC 202033
Query 40467 TGAGCCTCATCTGGCATATCAGTTTCTCGACCTGGCAGGCCCGCGAAAGCTGAATGACCT 40526
|| ||||| ||||| ||||||||||||||| | ||||| ||||| || | || ||| |
Sbjct 202034 CGAACCTCACCTGGCTTATCAGTTTCTCGACGTAGCAGGGCCGCGCAAAATTAACGACAT 202093
Query 40527 TTCAGTCCTGTACCGCGATGAAAAGCACATCGCCTACACCGGGCAGCGCGGCGTGATGCT 40586
| || || || | ||||| || || || |||||||| |||||||||||||||||
Sbjct 202094 GACGGTGCTTTATAGTGATGACCGTCATATTGCTTACACCGGCCAGCGCGGCGTGATGCT 202153
Query 40587 CTATTACCACCGGAGCGCGATTGAAAAGGTTGGCGGGTTCGACCCGGTTTACGGGCGCGG 40646
||||||||||| ||||||||||| ||||| ||||| || |||||||| || || || ||
Sbjct 202154 GTATTACCACCGCAGCGCGATTGAGAAGGTCGGCGGCTTTGACCCGGTGTATGGTCGTGG 202213
Query 40647 GATGTACGAGCATTCAGACCTCGCTCTGCGCATTCATAATGCAGGGCTTA-CCTCATGGG 40705
|||||||||||| | || || || |||||||| ||||| | |||||| | | ||||
Sbjct 202214 CATGTACGAGCATCCTGATCTGGCGCTGCGCATCCATAACTC-TGGCTTATCAGCGTGGG 202272
Query 40706 CATATGCAGACGTTATCGGCTCTGAGAAGCTGATTTACTCGCTGGATGAGCATGAGTCGG 40765
||| ||| ||||| | || || || ||||||||||| |||||||| || ||||| ||
Sbjct 202273 CATTTGCTGACGTGACGGGTTCCGAAAAGCTGATTTATTCGCTGGACGAACATGAAGAGG 202332
Query 40766 TAGAGCGCTCAGTACCCAAGCCTGAGCGAGAGCGTCAGGTCAGCAACAACGTAAAAATTC 40825
| || || || || || | | || || || | ||| | || ||||| | | ||
Sbjct 202333 TGGAACGTTCGGTTCCAAGAACGGACCGTGAAGCACTGGTTCGTAATAACGTCACAGTTT 202392
Query 40826 ACAACGAGCGCCGAGACACGGGCTACACAGGATGGGCACCGTACCGCAGACAGCGCAATG 40885
||| | || || || | || || |||| | ||| ||||||| | || || |||
Sbjct 202393 TCAATGCCCGTCGTGATTCTGGTTATGCAGGGTATGCAGAGTACCGCCGCCAACGGGATG 202452
Query 40886 CCGTCATCACAACCTTGCTGACCAGTCATCCTGACCCGCAGCGAGGAACCAGGATGAAGC 40945
|| || || | |||||||||| || || ||||| ||||| | | |||||||
Sbjct 202453 TGGTGATTACCTCTCTGCTGACCAGCCAGCCAGACCCACAGCGCAGTGCGGCAATGAAGC 202512
Query 40946 CAGA-GCAG--TCGCTTATCGCCAGA-TGGTCAGAATCGATTAAAGGTGCCGATGCGGTC 41001
| || |||| |||| ||| || ||| | || || || || ||||| ||
Sbjct 202513 CTGATGCAGCAATGCTT-TCG---GACTGGGCTTCCTCTATACGTGGCGCTGATGCCGTA 202568
Query 41002 ATTCTCGCTGACGAGTTCGAATATTCCCCACCAGGC-CAGACAACGGTACGCGTACCTGT 41060
| || ||||| ||| || || | || || ||| | || ||| ||| |||
Sbjct 202569 GTGCTGGCTGATGAGCTCATTGATGCGCCCCCTGGCGCTGA-GCTTGTAACCGTTCCTCC 202627
Query 41061 CGTAGATATGAATGTTTACTTCCGGCGCTGGCTGCATATCTGGCAGCACCTGCGGGAGCA 41120
|| | |||| || || ||||||||| || |||| || ||||| ||| |||
Sbjct 202628 AGTTCAGATGAGCCCCTATTTTGCGCGCTGGCTTCACATCTACCAATACCTGAGGGCGCA 202687
Query 41121 TCCGGAATATCGTTTCGTCTGGTGTACCGATGGAACCGATGTCGAAATGCTTCGCGCGCC 41180
|| ||||| | ||||| |||||||| || || |||||||| | ||||||| | ||
Sbjct 202688 CCCTGAATACCACTTCGTATGGTGTACGGACGGTACCGATGTTCAGATGCTTCAGGAACC 202747
Query 41181 ATGGGAAGAAATGCAGCCCGGCGTGATTTATGTCGGCTCTGAGCCAAAGACATATTCCGA 41240
||| ||| || | || |||| ||||| || || || || || ||| | ||
Sbjct 202748 CTGGAGCTGCATGGAGTCGGGAAAAGTTTACGTCGGTTCAGAACCCAAAACCTATGCAGA 202807
Query 41241 ----TGAATGGGTCATCAAAAACCATCCCGAGCGCGTATA---TCAGTCATTCCTGAAGC 41293
|| |||| | |||||||| || | ||||| |||| || || |||
Sbjct 202808 CCCGTGGATGGAGC----AAAACCATTACGGTCAGGTATACGCGCAGT--TTTTTG-AGC 202860
Query 41294 AGTATTCCAGTGACA---CTATGCTGAACGCCGGATTGCTTGGAGGGTTACGCCAAGATG 41350
| || || ||| || || |||| || || |||| || ||| | ||| |||| |
Sbjct 202861 TGCAT---CGTAACAGCGCTTTGTTGAATGCTGGCCTGCTCGGCGGGCTGCGCGAAGACG 202917
Query 41351 TCATGGAGTTTGCTCACCGCATCGTGCGGCTTTACTACCGCATTG--AGTCAGACCGCTT 41408
| ||||| ||||| || ||||| | || || | ||||| | || || ||| || ||
Sbjct 202918 TGATGGATTTTGCCCATCGCATGATCCGCCTGCATTACCGGAGTGAAAGCCAG--CGTTT 202975
Query 41409 CTGGAATAAAG--AAGGGGCAGCAAGGGCGGTAGGT-GACATGATCGCATTCGGTATCGT 41465
|||| |||| | ||| || || | | |||| || ||| ||| |||||||||||
Sbjct 202976 CTGGGATAAGGGTAAGACGCCGCCAACAC---AGGTCGATATGGGCGCTTTCGGTATCGT 203032
Query 41466 GGTGAAATCGTTCGGTGACCGAGTGATTACCGGCCCGAAAGTGCACACGGTGTTTAAGAC 41525
| ||| || ||||||||||| | |||||||||| | ||||| || |||||||||||
Sbjct 203033 TGCGAAGTCATTCGGTGACCGTATCGTTACCGGCCCTATGGTGCATACAGTGTTTAAGAC 203092
Query 41526 CAACGGCATCGGCAAGGAAACAGCATGGTGGCAGCACAAGTAACATTCGCGGTGGTAGGT 41585
||| ||||| ||||| ||||||| |||||||| ||| || | || || |||
Sbjct 203093 TGGCGGGATCGGAAAGGAGTTTGCATGGTTTCAGCACAAATAAATTTTGTCGTCGTCGGT 203152
Query 41586 CATCACCGACGCGCC--GAGCAGGCTCACAGGCTTGCTGAGAGCCTTAATGCGCGGCTTT 41643
|||||| ||||| | || |||| | ||| ||||| || ||||| | ||
Sbjct 203153 CATCAC--ACGCGGCGTGAAAAGGCGGAGTTGCTCGCTGATTTGCTGAATGCTCACCTGC 203210
Query 41644 TTATCGATGATGCCGACCACGGAGCCAACTGGAATCACCTGAGGGCCATTAAGTGGGCTG 41703
| || ||||| |||| ||| || ||||||||||||| | | ||||| ||||||| |
Sbjct 203211 TGATTGATGACCAAGACCGCGGCGCTAACTGGAATCACCGGCGCGCCATGGAGTGGGCAG 203270
Query 41704 CCGCCCAG--TCAGCGCGAGTGGTCGTGCTGGAAGACGATGCCCAGCCAGTAGATGGTTT 41761
| | ||| ||||||| || || || | || || ||||| || || ||| ||
Sbjct 203271 CTGATCAGGATCAGCGC--GTTGTTGTCATTGAGGATGATGCGATCCCTGTTTCTGGCTT 203328
Query 41762 TGCAG---GGATTGC-GGCTGAATGGTGCGCCAGATTCCCTGATGAGCTAATCAGCTTCT 41817
| | | |||| ||||| || | ||| || || ||||| || || |||||||
Sbjct 203329 TACTGACTCTGTTGCTGGCTGGATTGAACGC----TTTCCGGATGACCTCATTAGCTTCT 203384
Query 41818 ATCTTGGCACCGGTCGCCCGCCGCAGTATCA 41848
|||| || ||||| || || || || || ||
Sbjct 203385 ATCTGGGTACCGGGCGACCTCCACAATACCA 203415
Score = 282 bits (312), Expect = 1e-71
Identities = 503/724 (69%), Gaps = 15/724 (2%)
Strand=Plus/Plus
Query 8105 CATTCATCAATCAGCCTTTTCGCCTCATGAGGCTCCAGCCATCGAATGCGTTTGTTCTTC 8164
|||||||||| ||| | || ||| |||| || || ||||||| | ||| || || ||
Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986
Query 8165 GGCTGAGGCACCTTCACAATCGGCGCTTTGTCCAGCATCTTCCATTCACGCTCAGCGGCG 8224
| ||| || || || | | |||||||| |||||| ||||| || || || ||||||
Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046
Query 8225 CGTAACAACGCTTTGATGAAGGAAAGGTGAGTGGCCTTTGTGGCTGTCGCTGCCGGTCGT 8284
|| | || || || || | || ||||| | ||||| |||||||| |||| | ||
Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGT-GCTGACCTTCTG 174105
Query 8285 G-GCACATA---TGGCGGAACTGGCTTTCCCT-TCTTCCTTAACGCCTCTTCTCTGAGCT 8339
| || |||| ||||| || | ||||| ||||| || | || | | |
Sbjct 174106 GCGCTCATACTTTGGCG---CTT-CGATCCCTCTCTTCGCCAAGGACTGTGAATGCAACC 174161
Query 8340 TCCAGTTTTCCTCGTGCCGGCGGTTGGTCATCTT-CTGAATCGCGTTATAGATTCGTGTC 8398
||||||| | ||||||||| ||| || |||| |||| | |||||| |
Sbjct 174162 GATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGA-TCGCCGTGTAGATTTTGGCT 174220
Query 8399 TCAGTGATGTTCTTCAGCTGCATCCCTGCAAAGTGTTGCAACCAGAATCCGATCCGGCTC 8458
|| || || | ||||| || || |||| |||| || || ||||||||| ||||||||
Sbjct 174221 TCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTT 174280
Query 8459 TTGTCATCGTCCAGTGACTTCTTATGTGCCTTTTCCTCAAGCCACCTGACACACGCTTCC 8518
|||||||| ||||| || ||||| | ||| ||| || | |||||| | ||| || ||
Sbjct 174281 TTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCT 174340
Query 8519 TCGAATGTCATGTCCGGAGTCTCGCCCAGCTTGCTTACTCGCCAGGCTTCGGCCTTCAGC 8578
|| || || | ||| ||| ||||||||| | || ||||||| || | ||
Sbjct 174341 TCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTT 174400
Query 8579 TTGTCATGGAGTTCCGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTT 8638
||||| || || ||| |||| ||| |||| | |||||||||||| | |||| ||||
Sbjct 174401 TTGTCGTGCAGCTCCTGTGCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTT 174460
Query 8639 TTGCCGTCCGGCAATGTGAAACTGGCGTACCAGGTCTCACCTCTGCGGAAGAGTGACATA 8698
| ||| |||||| | ||| || ||||||||| | | |||||| ||||||| |||||
Sbjct 174461 TGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATG 174520
Query 8699 TCAATTCCTCTCGTATGCCATCACCCGCGCTCACGGCGACAGTATGCAGCGGAGATTTCA 8758
| |||||| | ||| |||||| | |||||||||||||| | | ||| ||||
Sbjct 174521 TTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCA 174577
Query 8759 GGGCTGCAATGCAAGCCTGGCGAGTGGTGAGGTAGGGGGATTTTGGTTTTGAGGGGTCTT 8818
| || ||||| || || || || ||| || ||| ||||| |||||||| || || || |
Sbjct 174578 GTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGATGGATCCT 174637
Query 8819 TGCG 8822
||||
Sbjct 174638 TGCG 174641
Score = 190 bits (210), Expect = 6e-44
Identities = 161/198 (81%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 7564 CGTGTGGGACAAATTTGGGACGCAATCTCCAAAAATTGAGTCTATTTGCTTCGCGTGCTC 7623
|| |||||||| ||||||||| || | |||||||| | |||||| ||||||||||||||
Sbjct 175477 CGAGTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTC 175536
Query 7624 GGTCAGGTGATTAGGTGCCAGATGTGCATAACGGCGGACCATTTCTATTGACTCCCATCC 7683
|| | ||||| || |||||||| || || || || ||||| || || |||||||| ||
Sbjct 175537 CGTTAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCC 175596
Query 7684 TCCCATCTCCTGAAGAACCGAAATCGGGACGCCCGCCTGAACTAACCAGCTTGCCCAAGT 7743
||||| ||||||||||| || | |||||| || ||||||| | |||||||||||| ||
Sbjct 175597 GCCCATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGT 175656
Query 7744 GTGTCTCAGGTCATGGAA 7761
|||||||||||| || ||
Sbjct 175657 GTGTCTCAGGTCGTGAAA 175674
>seq6760
Length=71796
Score = 320 bits (354), Expect = 5e-83
Identities = 360/482 (75%), Gaps = 0/482 (0%)
Strand=Plus/Plus
Query 6056 TAAATTCTTCCAATATATTCCCCCAGGACACCTATCCCTATAAGCTGGACGCCGCCAAGG 6115
||||| ||||| || || || || || || || || ||||| ||||||| || || |||
Sbjct 16352 TAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGCTGGATTCCACCGAGG 16411
Query 6116 AAAAGGATAGAAACCAGAAGGGATGGATATCCGCGAACCGGGTTGCCAAAGGCAAGCGTG 6175
||||| |||||||||| | || ||||| || |||| ||||||||||| || |||
Sbjct 16412 AAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTGCCAAAAATGAGGGTG 16471
Query 6176 TCGACAATCATCCACGCTCCATAGAGAAATGACAGCCCGGCCACTAACAACCCAATGTAC 6235
|| | |||||| | | || ||| || ||||| |||||||| || | || || |||
Sbjct 16472 TCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACAAAAAGACCTATATAC 16531
Query 6236 GTCCACATTCTCAGAGGAAAGGTCGAGAAGCTGGTAATACCCTCAAGCGCGAGATTCCAG 6295
|||||||||| ||| ||||| || ||||| || || || || || || || |||||
Sbjct 16532 GTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCGAGAGCAAGGTTCCAC 16591
Query 6296 AGTTTCCACCCGTTAAATTTGGTGCTTCCTGCCACGCGTTCAGCGCGCGAATACTCAACT 6355
|||||||| || |||||||| || || || ||||||||| | || | ||| || ||
Sbjct 16592 AGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCTCGGGTATATTCGACA 16651
Query 6356 ACGTCAGTGCGTCCGCCGACCCATGACAGGACTCCTTTCATGAACAGGTTCCGCTCAGGC 6415
|| |||||||| || |||||||| ||||| || ||||||||||| | ||| || |||||
Sbjct 16652 ACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAATAAGTTTCGTTCAGGG 16711
Query 6416 ATTAGCTTGATGTTTTCTACTACCTCACGAGACATCAGGCGAAAATCACCCACGTTTTCC 6475
| | ||| ||||||||||| || | |||||||| | | ||||| || |||||||||
Sbjct 16712 AGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAATCGCCAACGTTTTCC 16771
Query 6476 TCGATTTGTGGGTTGCTTATTTTGTTGTGCAGCTTATAGAACATTTCAGCGCTTTTGCGC 6535
|| || | || ||||| || |||| || |||||||| ||| ||||||||||| |||
Sbjct 16772 TCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCACTCAGCGCTTTTACGC 16831
Query 6536 TT 6537
||
Sbjct 16832 TT 16833
>seq28451
Length=8471
Score = 87.8 bits (96), Expect = 5e-13
Identities = 240/362 (66%), Gaps = 8/362 (2%)
Strand=Plus/Minus
Query 28309 TGCCGGAAGCGTTGCGCCTGGCTGCAGACCTCGCAGAGCAGAAAGCGGAGCTGGAAAACA 28368
|||| || || | ||||||||||| ||||| || || | || || | ||||
Sbjct 2368 TGCCCGAGGCTCTCCGCCTGGCTGCTGACCTTGCCGACGAAAAGTTGGCGTTGGAGTCAC 2309
Query 28369 AGCTCGCTATTGCCGCGCCTAAAGTTGAATTTGTTGATCACTACGTCGAGGCAACCGGCG 28428
|||| || | || || || ||||| ||||| |||||||| ||||| ||| | |||
Sbjct 2308 AGCTGGCGCTGGCGGCCCCGAAAGTGGAATTCGTTGATCAGTACGTAATGGCTAAGGGCT 2249
Query 28429 CGATGGGCTTCCGTGAAG-CAGCAAAACTGCTGAAGGTGAAAGAAACGGACTTCCGGTTG 28487
| ||||| ||||| | | | || ||| ||||| | | ||||||| | || ||| || ||
Sbjct 2248 CTATGGGATTCCGCGCGGTCTGC-AAATTGCTGCATGCGAAAGAACCTGAATTCAGGATG 2190
Query 28488 TTCCTGATTGAGCAGGGCATCATGTATCGCCTGGCCGGAAAACTGACACCCTATGCTCAG 28547
|||||| | ||| | | ||| | || || |||| || | |||| || | || |
Sbjct 2189 TTCCTGCTCGAGAAAGACATTGTTTACCGGCTGGAAGGCCAGTTGACGCCAAAGGCCAAT 2130
Query 28548 CATCTCGATGCCGGTCGCTTCACCATGAAAACCGG--AGAGAAC-CAGAATAACGGCCAT 28604
||| | || || || | || |||||||||| || || |||||| | |||
Sbjct 2129 CATTTGGAGGCAGGGTGTTTTGAGGTGAAAACCGGTACCAGCACGCAGAATCA---ACAT 2073
Query 28605 GCCTTCACTCAGGCCAAGTTCACTCCGCGTGGCATTCAATGGGTAGCCGCATTGCTGGCA 28664
|| || ||||| | ||||| || || ||| ||||||| |||| | || |||
Sbjct 2072 GCGTTTCGGCAGGCGAGATTCACGGCGAAGGGTATTGAATGGGTTGCCGGACTGTGGGCC 2013
Query 28665 GG 28666
||
Sbjct 2012 GG 2011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152109163684484
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