Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq725 518 1e-142 seq6760 320 5e-83 seq28451 87.8 5e-13 >seq725 Length=236385 Score = 518 bits (574), Expect = 1e-142 Identities = 1158/1711 (68%), Gaps = 58/1711 (3%) Strand=Plus/Plus Query 40167 CATTGGTATTGCCATCACCACTCACAACCGGCCCGATGTACTGGCGCGCGCACTTGAGCA 40226 ||||||||| || |||||||| ||||| ||||| || || || || | | | || Sbjct 201734 CATTGGTATCGCGATCACCACCCACAATCGGCCGGAAGTTCTCGCAAAATCCATAGCTCA 201793 Query 40227 GCACCAGAAGCATCTACCACCCGGAGCGGTGGTCGTGATTGTCGATGATGGCTCGGTGCC 40286 |||| ||||| |||| | || || |||| | | |||||||||| || | ||| Sbjct 201794 GCACATCAAGCACTTACCGGCTGGCGCAAAGGTCATCGTAATCGATGATGGTTCAGCGCC 201853 Query 40287 TGCTGCCGTAGCACAAGAATCTGCACGGCTCATCCGGCATGAGCAATCACAGGGTATCGT 40346 || || | || | |||| | | ||||| || ||| ||| | || || || Sbjct 201854 AGCAGCTGCCGCGCCAGAAGGTATCGAAATTATCCGTCAGGAGGTATCGCTCGGAATTGT 201913 Query 40347 GGCATCTAAAAACGCCAGCATTGAAGCCCTGATAGATGCCGGTTGCGAACACATCTTCCT 40406 ||||| ||||| ||| | || || ||||| ||||| ||||| || || | || || Sbjct 201914 TGCATCAAAAAATCGCAGTCTCGAGGCTCTGATCGATGCTGGTTGTGAGCAGCTGTTTCT 201973 Query 40407 GTGGGATGATGACGCGTGGCCGATTGCTGATGGCTGGCATATTCCGTATATCGAGTCTCC 40466 |||||| ||||| || | ||||| ||| | |||||| |||| || ||||| || || Sbjct 201974 GTGGGACGATGATGCTTATCCGATATATGACGACTGGCACGTTCCTTACATCGAATCCCC 202033 Query 40467 TGAGCCTCATCTGGCATATCAGTTTCTCGACCTGGCAGGCCCGCGAAAGCTGAATGACCT 40526 || ||||| ||||| ||||||||||||||| | ||||| ||||| || | || ||| | Sbjct 202034 CGAACCTCACCTGGCTTATCAGTTTCTCGACGTAGCAGGGCCGCGCAAAATTAACGACAT 202093 Query 40527 TTCAGTCCTGTACCGCGATGAAAAGCACATCGCCTACACCGGGCAGCGCGGCGTGATGCT 40586 | || || || | ||||| || || || |||||||| ||||||||||||||||| Sbjct 202094 GACGGTGCTTTATAGTGATGACCGTCATATTGCTTACACCGGCCAGCGCGGCGTGATGCT 202153 Query 40587 CTATTACCACCGGAGCGCGATTGAAAAGGTTGGCGGGTTCGACCCGGTTTACGGGCGCGG 40646 ||||||||||| ||||||||||| ||||| ||||| || |||||||| || || || || Sbjct 202154 GTATTACCACCGCAGCGCGATTGAGAAGGTCGGCGGCTTTGACCCGGTGTATGGTCGTGG 202213 Query 40647 GATGTACGAGCATTCAGACCTCGCTCTGCGCATTCATAATGCAGGGCTTA-CCTCATGGG 40705 |||||||||||| | || || || |||||||| ||||| | |||||| | | |||| Sbjct 202214 CATGTACGAGCATCCTGATCTGGCGCTGCGCATCCATAACTC-TGGCTTATCAGCGTGGG 202272 Query 40706 CATATGCAGACGTTATCGGCTCTGAGAAGCTGATTTACTCGCTGGATGAGCATGAGTCGG 40765 ||| ||| ||||| | || || || ||||||||||| |||||||| || ||||| || Sbjct 202273 CATTTGCTGACGTGACGGGTTCCGAAAAGCTGATTTATTCGCTGGACGAACATGAAGAGG 202332 Query 40766 TAGAGCGCTCAGTACCCAAGCCTGAGCGAGAGCGTCAGGTCAGCAACAACGTAAAAATTC 40825 | || || || || || | | || || || | ||| | || ||||| | | || Sbjct 202333 TGGAACGTTCGGTTCCAAGAACGGACCGTGAAGCACTGGTTCGTAATAACGTCACAGTTT 202392 Query 40826 ACAACGAGCGCCGAGACACGGGCTACACAGGATGGGCACCGTACCGCAGACAGCGCAATG 40885 ||| | || || || | || || |||| | ||| ||||||| | || || ||| Sbjct 202393 TCAATGCCCGTCGTGATTCTGGTTATGCAGGGTATGCAGAGTACCGCCGCCAACGGGATG 202452 Query 40886 CCGTCATCACAACCTTGCTGACCAGTCATCCTGACCCGCAGCGAGGAACCAGGATGAAGC 40945 || || || | |||||||||| || || ||||| ||||| | | ||||||| Sbjct 202453 TGGTGATTACCTCTCTGCTGACCAGCCAGCCAGACCCACAGCGCAGTGCGGCAATGAAGC 202512 Query 40946 CAGA-GCAG--TCGCTTATCGCCAGA-TGGTCAGAATCGATTAAAGGTGCCGATGCGGTC 41001 | || |||| |||| ||| || ||| | || || || || ||||| || Sbjct 202513 CTGATGCAGCAATGCTT-TCG---GACTGGGCTTCCTCTATACGTGGCGCTGATGCCGTA 202568 Query 41002 ATTCTCGCTGACGAGTTCGAATATTCCCCACCAGGC-CAGACAACGGTACGCGTACCTGT 41060 | || ||||| ||| || || | || || ||| | || ||| ||| ||| Sbjct 202569 GTGCTGGCTGATGAGCTCATTGATGCGCCCCCTGGCGCTGA-GCTTGTAACCGTTCCTCC 202627 Query 41061 CGTAGATATGAATGTTTACTTCCGGCGCTGGCTGCATATCTGGCAGCACCTGCGGGAGCA 41120 || | |||| || || ||||||||| || |||| || ||||| ||| ||| Sbjct 202628 AGTTCAGATGAGCCCCTATTTTGCGCGCTGGCTTCACATCTACCAATACCTGAGGGCGCA 202687 Query 41121 TCCGGAATATCGTTTCGTCTGGTGTACCGATGGAACCGATGTCGAAATGCTTCGCGCGCC 41180 || ||||| | ||||| |||||||| || || |||||||| | ||||||| | || Sbjct 202688 CCCTGAATACCACTTCGTATGGTGTACGGACGGTACCGATGTTCAGATGCTTCAGGAACC 202747 Query 41181 ATGGGAAGAAATGCAGCCCGGCGTGATTTATGTCGGCTCTGAGCCAAAGACATATTCCGA 41240 ||| ||| || | || |||| ||||| || || || || || ||| | || Sbjct 202748 CTGGAGCTGCATGGAGTCGGGAAAAGTTTACGTCGGTTCAGAACCCAAAACCTATGCAGA 202807 Query 41241 ----TGAATGGGTCATCAAAAACCATCCCGAGCGCGTATA---TCAGTCATTCCTGAAGC 41293 || |||| | |||||||| || | ||||| |||| || || ||| Sbjct 202808 CCCGTGGATGGAGC----AAAACCATTACGGTCAGGTATACGCGCAGT--TTTTTG-AGC 202860 Query 41294 AGTATTCCAGTGACA---CTATGCTGAACGCCGGATTGCTTGGAGGGTTACGCCAAGATG 41350 | || || ||| || || |||| || || |||| || ||| | ||| |||| | Sbjct 202861 TGCAT---CGTAACAGCGCTTTGTTGAATGCTGGCCTGCTCGGCGGGCTGCGCGAAGACG 202917 Query 41351 TCATGGAGTTTGCTCACCGCATCGTGCGGCTTTACTACCGCATTG--AGTCAGACCGCTT 41408 | ||||| ||||| || ||||| | || || | ||||| | || || ||| || || Sbjct 202918 TGATGGATTTTGCCCATCGCATGATCCGCCTGCATTACCGGAGTGAAAGCCAG--CGTTT 202975 Query 41409 CTGGAATAAAG--AAGGGGCAGCAAGGGCGGTAGGT-GACATGATCGCATTCGGTATCGT 41465 |||| |||| | ||| || || | | |||| || ||| ||| ||||||||||| Sbjct 202976 CTGGGATAAGGGTAAGACGCCGCCAACAC---AGGTCGATATGGGCGCTTTCGGTATCGT 203032 Query 41466 GGTGAAATCGTTCGGTGACCGAGTGATTACCGGCCCGAAAGTGCACACGGTGTTTAAGAC 41525 | ||| || ||||||||||| | |||||||||| | ||||| || ||||||||||| Sbjct 203033 TGCGAAGTCATTCGGTGACCGTATCGTTACCGGCCCTATGGTGCATACAGTGTTTAAGAC 203092 Query 41526 CAACGGCATCGGCAAGGAAACAGCATGGTGGCAGCACAAGTAACATTCGCGGTGGTAGGT 41585 ||| ||||| ||||| ||||||| |||||||| ||| || | || || ||| Sbjct 203093 TGGCGGGATCGGAAAGGAGTTTGCATGGTTTCAGCACAAATAAATTTTGTCGTCGTCGGT 203152 Query 41586 CATCACCGACGCGCC--GAGCAGGCTCACAGGCTTGCTGAGAGCCTTAATGCGCGGCTTT 41643 |||||| ||||| | || |||| | ||| ||||| || ||||| | || Sbjct 203153 CATCAC--ACGCGGCGTGAAAAGGCGGAGTTGCTCGCTGATTTGCTGAATGCTCACCTGC 203210 Query 41644 TTATCGATGATGCCGACCACGGAGCCAACTGGAATCACCTGAGGGCCATTAAGTGGGCTG 41703 | || ||||| |||| ||| || ||||||||||||| | | ||||| ||||||| | Sbjct 203211 TGATTGATGACCAAGACCGCGGCGCTAACTGGAATCACCGGCGCGCCATGGAGTGGGCAG 203270 Query 41704 CCGCCCAG--TCAGCGCGAGTGGTCGTGCTGGAAGACGATGCCCAGCCAGTAGATGGTTT 41761 | | ||| ||||||| || || || | || || ||||| || || ||| || Sbjct 203271 CTGATCAGGATCAGCGC--GTTGTTGTCATTGAGGATGATGCGATCCCTGTTTCTGGCTT 203328 Query 41762 TGCAG---GGATTGC-GGCTGAATGGTGCGCCAGATTCCCTGATGAGCTAATCAGCTTCT 41817 | | | |||| ||||| || | ||| || || ||||| || || ||||||| Sbjct 203329 TACTGACTCTGTTGCTGGCTGGATTGAACGC----TTTCCGGATGACCTCATTAGCTTCT 203384 Query 41818 ATCTTGGCACCGGTCGCCCGCCGCAGTATCA 41848 |||| || ||||| || || || || || || Sbjct 203385 ATCTGGGTACCGGGCGACCTCCACAATACCA 203415 Score = 282 bits (312), Expect = 1e-71 Identities = 503/724 (69%), Gaps = 15/724 (2%) Strand=Plus/Plus Query 8105 CATTCATCAATCAGCCTTTTCGCCTCATGAGGCTCCAGCCATCGAATGCGTTTGTTCTTC 8164 |||||||||| ||| | || ||| |||| || || ||||||| | ||| || || || Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986 Query 8165 GGCTGAGGCACCTTCACAATCGGCGCTTTGTCCAGCATCTTCCATTCACGCTCAGCGGCG 8224 | ||| || || || | | |||||||| |||||| ||||| || || || |||||| Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046 Query 8225 CGTAACAACGCTTTGATGAAGGAAAGGTGAGTGGCCTTTGTGGCTGTCGCTGCCGGTCGT 8284 || | || || || || | || ||||| | ||||| |||||||| |||| | || Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGT-GCTGACCTTCTG 174105 Query 8285 G-GCACATA---TGGCGGAACTGGCTTTCCCT-TCTTCCTTAACGCCTCTTCTCTGAGCT 8339 | || |||| ||||| || | ||||| ||||| || | || | | | Sbjct 174106 GCGCTCATACTTTGGCG---CTT-CGATCCCTCTCTTCGCCAAGGACTGTGAATGCAACC 174161 Query 8340 TCCAGTTTTCCTCGTGCCGGCGGTTGGTCATCTT-CTGAATCGCGTTATAGATTCGTGTC 8398 ||||||| | ||||||||| ||| || |||| |||| | |||||| | Sbjct 174162 GATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGA-TCGCCGTGTAGATTTTGGCT 174220 Query 8399 TCAGTGATGTTCTTCAGCTGCATCCCTGCAAAGTGTTGCAACCAGAATCCGATCCGGCTC 8458 || || || | ||||| || || |||| |||| || || ||||||||| |||||||| Sbjct 174221 TCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTT 174280 Query 8459 TTGTCATCGTCCAGTGACTTCTTATGTGCCTTTTCCTCAAGCCACCTGACACACGCTTCC 8518 |||||||| ||||| || ||||| | ||| ||| || | |||||| | ||| || || Sbjct 174281 TTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCT 174340 Query 8519 TCGAATGTCATGTCCGGAGTCTCGCCCAGCTTGCTTACTCGCCAGGCTTCGGCCTTCAGC 8578 || || || | ||| ||| ||||||||| | || ||||||| || | || Sbjct 174341 TCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTT 174400 Query 8579 TTGTCATGGAGTTCCGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTT 8638 ||||| || || ||| |||| ||| |||| | |||||||||||| | |||| |||| Sbjct 174401 TTGTCGTGCAGCTCCTGTGCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTT 174460 Query 8639 TTGCCGTCCGGCAATGTGAAACTGGCGTACCAGGTCTCACCTCTGCGGAAGAGTGACATA 8698 | ||| |||||| | ||| || ||||||||| | | |||||| ||||||| ||||| Sbjct 174461 TGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATG 174520 Query 8699 TCAATTCCTCTCGTATGCCATCACCCGCGCTCACGGCGACAGTATGCAGCGGAGATTTCA 8758 | |||||| | ||| |||||| | |||||||||||||| | | ||| |||| Sbjct 174521 TTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCA 174577 Query 8759 GGGCTGCAATGCAAGCCTGGCGAGTGGTGAGGTAGGGGGATTTTGGTTTTGAGGGGTCTT 8818 | || ||||| || || || || ||| || ||| ||||| |||||||| || || || | Sbjct 174578 GTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGATGGATCCT 174637 Query 8819 TGCG 8822 |||| Sbjct 174638 TGCG 174641 Score = 190 bits (210), Expect = 6e-44 Identities = 161/198 (81%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 7564 CGTGTGGGACAAATTTGGGACGCAATCTCCAAAAATTGAGTCTATTTGCTTCGCGTGCTC 7623 || |||||||| ||||||||| || | |||||||| | |||||| |||||||||||||| Sbjct 175477 CGAGTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTC 175536 Query 7624 GGTCAGGTGATTAGGTGCCAGATGTGCATAACGGCGGACCATTTCTATTGACTCCCATCC 7683 || | ||||| || |||||||| || || || || ||||| || || |||||||| || Sbjct 175537 CGTTAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCC 175596 Query 7684 TCCCATCTCCTGAAGAACCGAAATCGGGACGCCCGCCTGAACTAACCAGCTTGCCCAAGT 7743 ||||| ||||||||||| || | |||||| || ||||||| | |||||||||||| || Sbjct 175597 GCCCATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGT 175656 Query 7744 GTGTCTCAGGTCATGGAA 7761 |||||||||||| || || Sbjct 175657 GTGTCTCAGGTCGTGAAA 175674 >seq6760 Length=71796 Score = 320 bits (354), Expect = 5e-83 Identities = 360/482 (75%), Gaps = 0/482 (0%) Strand=Plus/Plus Query 6056 TAAATTCTTCCAATATATTCCCCCAGGACACCTATCCCTATAAGCTGGACGCCGCCAAGG 6115 ||||| ||||| || || || || || || || || ||||| ||||||| || || ||| Sbjct 16352 TAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGCTGGATTCCACCGAGG 16411 Query 6116 AAAAGGATAGAAACCAGAAGGGATGGATATCCGCGAACCGGGTTGCCAAAGGCAAGCGTG 6175 ||||| |||||||||| | || ||||| || |||| ||||||||||| || ||| Sbjct 16412 AAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTGCCAAAAATGAGGGTG 16471 Query 6176 TCGACAATCATCCACGCTCCATAGAGAAATGACAGCCCGGCCACTAACAACCCAATGTAC 6235 || | |||||| | | || ||| || ||||| |||||||| || | || || ||| Sbjct 16472 TCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACAAAAAGACCTATATAC 16531 Query 6236 GTCCACATTCTCAGAGGAAAGGTCGAGAAGCTGGTAATACCCTCAAGCGCGAGATTCCAG 6295 |||||||||| ||| ||||| || ||||| || || || || || || || ||||| Sbjct 16532 GTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCGAGAGCAAGGTTCCAC 16591 Query 6296 AGTTTCCACCCGTTAAATTTGGTGCTTCCTGCCACGCGTTCAGCGCGCGAATACTCAACT 6355 |||||||| || |||||||| || || || ||||||||| | || | ||| || || Sbjct 16592 AGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCTCGGGTATATTCGACA 16651 Query 6356 ACGTCAGTGCGTCCGCCGACCCATGACAGGACTCCTTTCATGAACAGGTTCCGCTCAGGC 6415 || |||||||| || |||||||| ||||| || ||||||||||| | ||| || ||||| Sbjct 16652 ACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAATAAGTTTCGTTCAGGG 16711 Query 6416 ATTAGCTTGATGTTTTCTACTACCTCACGAGACATCAGGCGAAAATCACCCACGTTTTCC 6475 | | ||| ||||||||||| || | |||||||| | | ||||| || ||||||||| Sbjct 16712 AGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAATCGCCAACGTTTTCC 16771 Query 6476 TCGATTTGTGGGTTGCTTATTTTGTTGTGCAGCTTATAGAACATTTCAGCGCTTTTGCGC 6535 || || | || ||||| || |||| || |||||||| ||| ||||||||||| ||| Sbjct 16772 TCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCACTCAGCGCTTTTACGC 16831 Query 6536 TT 6537 || Sbjct 16832 TT 16833 >seq28451 Length=8471 Score = 87.8 bits (96), Expect = 5e-13 Identities = 240/362 (66%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 28309 TGCCGGAAGCGTTGCGCCTGGCTGCAGACCTCGCAGAGCAGAAAGCGGAGCTGGAAAACA 28368 |||| || || | ||||||||||| ||||| || || | || || | |||| Sbjct 2368 TGCCCGAGGCTCTCCGCCTGGCTGCTGACCTTGCCGACGAAAAGTTGGCGTTGGAGTCAC 2309 Query 28369 AGCTCGCTATTGCCGCGCCTAAAGTTGAATTTGTTGATCACTACGTCGAGGCAACCGGCG 28428 |||| || | || || || ||||| ||||| |||||||| ||||| ||| | ||| Sbjct 2308 AGCTGGCGCTGGCGGCCCCGAAAGTGGAATTCGTTGATCAGTACGTAATGGCTAAGGGCT 2249 Query 28429 CGATGGGCTTCCGTGAAG-CAGCAAAACTGCTGAAGGTGAAAGAAACGGACTTCCGGTTG 28487 | ||||| ||||| | | | || ||| ||||| | | ||||||| | || ||| || || Sbjct 2248 CTATGGGATTCCGCGCGGTCTGC-AAATTGCTGCATGCGAAAGAACCTGAATTCAGGATG 2190 Query 28488 TTCCTGATTGAGCAGGGCATCATGTATCGCCTGGCCGGAAAACTGACACCCTATGCTCAG 28547 |||||| | ||| | | ||| | || || |||| || | |||| || | || | Sbjct 2189 TTCCTGCTCGAGAAAGACATTGTTTACCGGCTGGAAGGCCAGTTGACGCCAAAGGCCAAT 2130 Query 28548 CATCTCGATGCCGGTCGCTTCACCATGAAAACCGG--AGAGAAC-CAGAATAACGGCCAT 28604 ||| | || || || | || |||||||||| || || |||||| | ||| Sbjct 2129 CATTTGGAGGCAGGGTGTTTTGAGGTGAAAACCGGTACCAGCACGCAGAATCA---ACAT 2073 Query 28605 GCCTTCACTCAGGCCAAGTTCACTCCGCGTGGCATTCAATGGGTAGCCGCATTGCTGGCA 28664 || || ||||| | ||||| || || ||| ||||||| |||| | || ||| Sbjct 2072 GCGTTTCGGCAGGCGAGATTCACGGCGAAGGGTATTGAATGGGTTGCCGGACTGTGGGCC 2013 Query 28665 GG 28666 || Sbjct 2012 GG 2011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152109163684484