Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq35 192 9e-44 seq6488 89.7 8e-13 >seq35 Length=455554 Score = 192 bits (212), Expect = 9e-44 Identities = 224/300 (75%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAA-AAAGCAG 122420 ||||||||| |||||||| ||| ||| | || | || | |||||| ||||| | Sbjct 112127 CATGAAACAGTATCTGGATTTAATGCAGAAAGTGCTCGATGA-GGGCACCCCTAAAGCCG 112185 Query 122421 ACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 ||||||| || |||||||| ||||| | || || || ||||| || || |||| Sbjct 112186 ACCGTACCGGTACGGGCACGTTGTCGATTTTTGGTCATCAGATGCGTTTCAACTTGCAGG 112245 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 |||||||||||||||||||||||||| || | |||||||| || ||||| || | Sbjct 112246 AAGGTTTCCCGCTGGTCACGACCAAACGCTGCCATTTACGCTCCATTATTCATGAACTCC 112305 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 |||||||||| | ||||| || ||||| |||||| || ||||| ||||| |||| Sbjct 112306 TGTGGTTCCTGAAAGGCGAAACTAACATTGCTTATCTGCGTGAAAACAATGTCAGCATCT 112365 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTG 122660 |||| || ||||| || ||| | || | ||||| ||||| ||||| ||||||||||||| Sbjct 112366 GGGACGAGTGGGCTGACGAAAACGGCGACCTCGGACCGGTTTACGGCAAGCAATGGCGTG 112425 Score = 134 bits (148), Expect = 2e-26 Identities = 225/323 (70%), Gaps = 2/323 (1%) Strand=Plus/Plus Query 123070 ATTGTCCTGTCAGCTGTATCAGCGCAG-TGCTGACATGTTCCTAGGCGTACCGTTTAACA 123128 ||||||||| |||||||| |||||| ||| || || ||||| ||| | ||||| || | Sbjct 112601 ATTGTCCTGCCAGCTGTACCAGCGCTCATGC-GATATCTTCCTCGGCTTGCCGTTCAATA 112659 Query 123129 TTGCCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTG 123188 | ||| ||||| || ||| | || ||| | || || || | | | | ||| |||| Sbjct 112660 TCGCCAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCTTGAAGTGGGTG 112719 Query 123189 ACTTCGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATT 123248 | || || ||||||||||| ||| ||| |||||| ||||||| |||| ||| | || Sbjct 112720 ATTTTGTCTGGACGGGTGGCGATACGCACCTGTACAGCAACCACATGGAACAGACGCATC 112779 Query 123249 TGCAGTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATT 123308 |||| | | || ||||| | | |||| ||| |||| ||||| || |||| | Sbjct 112780 TGCAACTGAGCCGTGAACCCCGTGCGTTGCCAAAACTTGTCATTAAGCGCAAACCGGCCT 112839 Query 123309 CTATCTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTA 123368 | | || || || || || ||||||||||| | | || ||||| |||| || | Sbjct 112840 CCTTGTTTGATTACAACTTCGAAGATTTCGAGATTGAAGGGTACGATCCGCACCCTGCAA 112899 Query 123369 TTAAGGCACCGGTGGCGATATGA 123391 | |||||||| || || || ||| Sbjct 112900 TCAAGGCACCTGTCGCTATCTGA 112922 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 122813 GAACAACTGAAAAACGACCCGGACAACCGCCGTATCATCGTCAGTGCCTGGAACGTGGCT 122872 ||||| ||||| || ||||| ||| || ||||| ||||| ||| |||||||||| Sbjct 112476 GAACAGCTGAAGAAAGACCCTGACTCGCGTCGTATTATCGTGTCTGCATGGAACGTGGGC 112535 Query 122873 GACCTGGATGAAATGGCGTTAGCACCATGCCATGCCTTCTTCCAGTTCTA 122922 || |||||| | |||||| | ||||| ||||| || |||||||||||||| Sbjct 112536 GAACTGGATAAGATGGCGCTGGCACCTTGCCACGCTTTCTTCCAGTTCTA 112585 >seq6488 Length=277817 Score = 89.7 bits (98), Expect = 8e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 167018 GTATTCTAGGGGCATAGCTCAGCTGGCAGAGCACCGGTCTCCAAAACCGGGTGTCCAAGG 167077 ||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| | Sbjct 123693 GTAATTTAGGGGCGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGTCGCGAG 123752 Query 167078 TTCGAATCCTTGTGCCCCTGCCAAATT 167104 ||||| || | |||||||||| ||| Sbjct 123753 TTCGAGTCTCTCCGCCCCTGCCATATT 123779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776962905986400