Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq223 201 1e-46 seq48539 82.4 6e-11 >seq223 Length=511576 Score = 201 bits (222), Expect = 1e-46 Identities = 329/474 (69%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 106519 CCGCCTGGAAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAAT 106578 ||||| ||||||||||| || ||||| || || ||||| || ||||| ||||| ||| Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 106579 TCCTTTACAGAATTTACAAACACGTTTCTTTTTTCAACGTCATGCATAAAATAGAAGGGG 106638 || ||||| || ||| || |||| | || | || | ||| |||||||| ||| Sbjct 113558 TCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGGG 113617 Query 106639 TCTGATAGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTA 106698 ||||| | |||||| || || || || || | | ||| | | |||| || ||| Sbjct 113618 TCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTTC 113677 Query 106699 GCCGCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTT 106758 |||||||| ||| ||||| ||||| || ||||| | | | ||||||| Sbjct 113678 AGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTGC 113737 Query 106759 TGCGGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCT 106818 || ||| |||| | ||||||||||||||||| || | |||||||||||| ||||| Sbjct 113738 TGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCCC 113797 Query 106819 TTGCATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATT 106878 || | |||||| | | |||||| ||| || ||||||| ||||| || Sbjct 113798 GCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTAATC 113857 Query 106879 CCATCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGG 106938 || || |||||||| || || | || |||||||| | ||||| | || || ||| Sbjct 113858 CCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCAGGG 113917 Query 106939 ACTTTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCG 106992 | |||||| |||| || ||| |||||||||||||| || |||||||| ||| Sbjct 113918 ATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCG 113971 >seq48539 Length=7100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| ||| ||| ||||| || Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| || || ||||| || ||| | ||| |||||| Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | |||||||| || || |||||||||||| || | | || || || Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| || || || || ||| |||| Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCACTTGGT 6923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425047921798086