Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq828 161 1e-34 seq785 150 2e-31 seq35 125 8e-24 >seq828 Length=218660 Score = 161 bits (178), Expect = 1e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 50827 ATCGAATATCAGCCAACTGTTAAGGTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTG 50886 || ||| |||||| || || ||||||||||| ||||| | ||||| ||||| || Sbjct 42340 ATGGAAGTTCAGCCGACCGTGCGCGTGGAAGGTGGTCAGCACCTGAACGTTAACGTACTG 42281 Query 50887 CGCCGCGAAACTCTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATC 50946 || || ||||| || ||||||||| |||||||||| |||||||||||| | || || Sbjct 42280 CGTCGTGAAACACTGGAAGATGCGGTTAAACATCCTGAGAAATACCCACAGCTGACTATT 42221 Query 50947 CGTGTTTCTGGTTATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTT 51006 ||||| ||||| ||||| || ||||| ||||||||||| |||||||||| || ||||| Sbjct 42220 CGTGTGTCTGGCTATGCGGTACGTTTCAACTCACTGACTGCTGAACAGCAGCGTGACGTG 42161 Query 51007 ATCGCCAGAACCTTTACAGAGAGTCTATAATGGC 51040 || || | || || || || || || |||| || Sbjct 42160 ATTACCCGTACTTTCACTGAAAGCCTGTAATCGC 42127 >seq785 Length=396209 Score = 150 bits (166), Expect = 2e-31 Identities = 716/1116 (64%), Gaps = 59/1116 (5%) Strand=Plus/Minus Query 152619 GATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACG 152678 || || |||||||| |||||||| || || || | || || || || || |||||| Sbjct 142691 GACGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACG 142632 Query 152679 CCTTTTGTCACAATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAG 152735 || |||||||| || ||| || | || || ||| ||| ||| |||||||| Sbjct 142631 CCGTTTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGG---GAATCGCGCCTGATCCAG 142575 Query 152736 AAAGCGATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATTC 152795 || | |||||| ||||| ||| |||||||| ||||| ||| ||| |||||||| Sbjct 142574 CAATCAATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTC 142515 Query 152796 CCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAAC 152852 |||||||||| ||||| || | || | || | ||| | | ||| ||| Sbjct 142514 CCAAAACTGG---TGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAAC 142458 Query 152853 TATGATATTAAGAAATTGGCCCTGGAATGTGCTTCAAAGCGTATGTATCCGGATAT---- 152908 || || || ||| || |||| |||||||| || ||||||||||| ||||| || Sbjct 142457 TACGACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTC 142398 Query 152909 TATTA-GCGCGGCTAATAACCGTCGTATTACTGGCTCTAGCATTCCTGTATCTCCTATGG 152967 |||| | | | | | | ||| || || | | ||| | | || |||| Sbjct 142397 AATTATGATCAGGTGGTGAAAGTC-----ACAGGTT----CGTTC--AAAACGCCGATGG 142349 Query 152968 GTTGTCGTAGTTTCCTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGAC 153027 | || || |||||||| |||||| |||| || | || | || | || || | Sbjct 142348 GCTGCCGCAGTTTCCTGGGCGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCC 142292 Query 153028 GTAATAACCTGGGCGTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCAC 153087 | ||||| | ||||| | | | || || || ||||||||| | |||| |||| | | Sbjct 142291 GCAATAATATCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAG-CGAACCGC 142233 Query 153088 AGGAAGATGAAGACGCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGT 153147 || |||| || || || ||| | || || || ||| || ||| Sbjct 142232 -----GACGAAG-CG--------GCGTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTG- 142188 Query 153148 GCTTTG-AAGCCCTGATGACTCGTATTGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCC 153206 || | |||| |||||||| || |||| |||| ||| | |||||| | || || Sbjct 142187 GCGAAGAAAGCGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCG 142128 Query 153207 CCGATCCTTTATACAGAAGGTGCGTTTGGTGTACGGTTGAAACCCGATGATGA-AATTCT 153265 || ||||| || | |||||||||| ||||| || ||||| | || || || | ||| Sbjct 142127 CCAATCCTGTACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCC 142068 Query 153266 GGAACTGTTCAAAAATGGGCGTAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 153325 || | | ||||||||||| ||| || || || |||||||| || |||||||||| Sbjct 142067 GGCA-TCTTCAAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAAAC 142009 Query 153326 TCTGA---TGCTTTTCGG-ATCTGGACAACACCCATTCGAC-CGGATCGGTTCTCAGAAC 153380 | | ||| ||||| | | ||| ||| |||||| | | | ||| ||| Sbjct 142008 CATTAACGCGCTGTTCGGCAACCAGAC-CCACGTGTTCGACGCCGGCCAGTTACGCGAAA 141950 Query 153381 ATGGGTAGACTGATTCTGGAATATCTACGCGCTGCGACCGAAGCATGGAAAAAGAAAACC 153440 | | || | |||| ||| ||| || || |||||| |||||| | |||| Sbjct 141949 AAGCCGAGGC-GATTGTGGCTCGTCTGAAAGCGGCAACCGAAAGCTGGAAAGACGAAACG 141891 Query 153441 GGATTTGGGTTTAGTCTGTATTCAACCCCTGCTGAATCTCTATGTCATCGTTTCTGCAAA 153500 || | || || || ||||| || || ||| || || | || ||||| Sbjct 141890 GGCTACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGCGACCGCTTCTGTCGT 141831 Query 153501 CTAGACTATGAGAAATTCGGAAGTATCAAAGGGATCACAGATAAAGGCTGGTACACTAAC 153560 || || | | ||||||| | || | || |||||||| | ||||| ||| Sbjct 141830 CTGGATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAAGGTTACTACACCAAC 141771 Query 153561 AGTTTTCATCTGGACGTTGACCGTAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCC 153620 || || ||||||||||| || ||||||| |||| ||| ||| |||||| ||||| Sbjct 141770 AGCTTCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAACTCGACTTCGAAGCG 141711 Query 153621 GATTAT-CATTACATTGCAACTGCTGGACATATCAGCTATGTAGAATTCCCTGATATGAA 153679 ||| | || ||||| || || ||| |||||| |||| |||| | || | Sbjct 141710 CCGTATCCGCCACTCAGCAACGGC-GGTTTCATCTGCTATGGCGAATACCCTAACCTGCA 141652 Query 153680 AAACAACCTGGAAGCCCTTGAAAAAGTCTGGGATTA 153715 | |||| ||| |||| || ||| | || |||||||| Sbjct 141651 ACACAATCTGAAAGCGCTGGAAGACGTGTGGGATTA 141616 Score = 82.4 bits (90), Expect = 9e-11 Identities = 177/263 (67%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 152156 CAACGAAAACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCGGG 152215 |||||| || || |||||||| || ||||||| | || || || |||||||| Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAGTGATCCCGACCCAGCGTGACCTGCTGGCGGG 143095 Query 152216 TATCGTTTCTAAACATATGGCGCGTAAC--CATATTCTACCGAAACATATTGTAGAGGCG 152273 ||| || | || ||| ||| ||| |||||| ||||| || | || |||| Sbjct 143094 TATTGTCGCCAAGCATTA--CGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCG 143037 Query 152274 CATGATTCCGGTGATATTCATTATCACGATCTGGATTACAGCCCGTTCACCCCATACACT 152333 ||||| || || || |||||||| || || ||||| ||||||| ||| | Sbjct 143036 CATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTT 142977 Query 152334 AACTGCTGTCTTGTTGACCTAAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCT 152393 |||||| || | ||||| ||||||||||| | |||| ||| |||||||| || Sbjct 142976 AACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCG 142917 Query 152394 GATATCGAACCGCCTAAATCAAT 152416 || || || |||| || || || Sbjct 142916 GAAATTGACACGCCAAAGTCTAT 142894 >seq35 Length=455554 Score = 125 bits (138), Expect = 8e-24 Identities = 203/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 39323 GACCAGATCGCAAAAGTCATTGAACAACTGAAATCAACCCCAGACGATCGCG--GGATCA 39380 |||||| | ||||| || ||||||| ||||| | ||| ||| ||||| | || | Sbjct 112455 GACCAGCTGGCAAATGTGGTTGAACAGCTGAAGAAAGACCCTGAC--TCGCGTCGTATTA 112512 Query 39381 TCGTTTCGGCATGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTT 39440 |||| || ||||||||| | || || ||| | ||||| || || || ||| || Sbjct 112513 TCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCACGCTT 112572 Query 39441 TCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTG 39500 |||| |||||| ||| | |||||||| |||| ||| ||| ||||| ||| | Sbjct 112573 TCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCATGCG 112632 Query 39501 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCG 39560 || ||||| | || |||||||||||||||||| ||| || || ||| |||||| || | Sbjct 112633 ATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATGATGG 112692 Query 39561 CTGATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGAT 39610 | | |||| |||||||| ||| | || ||||| ||||| ||| Sbjct 112693 CGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557513488356720