Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_020080.1
Length=174413
Score E
Sequences producing significant alignments: (Bits) Value
seq828 161 1e-34
seq785 150 2e-31
seq35 125 8e-24
>seq828
Length=218660
Score = 161 bits (178), Expect = 1e-34
Identities = 164/214 (77%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 50827 ATCGAATATCAGCCAACTGTTAAGGTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTG 50886
|| ||| |||||| || || ||||||||||| ||||| | ||||| ||||| ||
Sbjct 42340 ATGGAAGTTCAGCCGACCGTGCGCGTGGAAGGTGGTCAGCACCTGAACGTTAACGTACTG 42281
Query 50887 CGCCGCGAAACTCTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATC 50946
|| || ||||| || ||||||||| |||||||||| |||||||||||| | || ||
Sbjct 42280 CGTCGTGAAACACTGGAAGATGCGGTTAAACATCCTGAGAAATACCCACAGCTGACTATT 42221
Query 50947 CGTGTTTCTGGTTATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTT 51006
||||| ||||| ||||| || ||||| ||||||||||| |||||||||| || |||||
Sbjct 42220 CGTGTGTCTGGCTATGCGGTACGTTTCAACTCACTGACTGCTGAACAGCAGCGTGACGTG 42161
Query 51007 ATCGCCAGAACCTTTACAGAGAGTCTATAATGGC 51040
|| || | || || || || || || |||| ||
Sbjct 42160 ATTACCCGTACTTTCACTGAAAGCCTGTAATCGC 42127
>seq785
Length=396209
Score = 150 bits (166), Expect = 2e-31
Identities = 716/1116 (64%), Gaps = 59/1116 (5%)
Strand=Plus/Minus
Query 152619 GATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACG 152678
|| || |||||||| |||||||| || || || | || || || || || ||||||
Sbjct 142691 GACGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACG 142632
Query 152679 CCTTTTGTCACAATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAG 152735
|| |||||||| || ||| || | || || ||| ||| ||| ||||||||
Sbjct 142631 CCGTTTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGG---GAATCGCGCCTGATCCAG 142575
Query 152736 AAAGCGATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATTC 152795
|| | |||||| ||||| ||| |||||||| ||||| ||| ||| ||||||||
Sbjct 142574 CAATCAATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTC 142515
Query 152796 CCAAAACTGGTTATGTTT---ATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAAC 152852
|||||||||| ||||| || | || | || | ||| | | ||| |||
Sbjct 142514 CCAAAACTGG---TGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAAC 142458
Query 152853 TATGATATTAAGAAATTGGCCCTGGAATGTGCTTCAAAGCGTATGTATCCGGATAT---- 152908
|| || || ||| || |||| |||||||| || ||||||||||| ||||| ||
Sbjct 142457 TACGACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTC 142398
Query 152909 TATTA-GCGCGGCTAATAACCGTCGTATTACTGGCTCTAGCATTCCTGTATCTCCTATGG 152967
|||| | | | | | | ||| || || | | ||| | | || ||||
Sbjct 142397 AATTATGATCAGGTGGTGAAAGTC-----ACAGGTT----CGTTC--AAAACGCCGATGG 142349
Query 152968 GTTGTCGTAGTTTCCTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGAC 153027
| || || |||||||| |||||| |||| || | || | || | || || |
Sbjct 142348 GCTGCCGCAGTTTCCTGGGCGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCC 142292
Query 153028 GTAATAACCTGGGCGTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCAC 153087
| ||||| | ||||| | | | || || || ||||||||| | |||| |||| | |
Sbjct 142291 GCAATAATATCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAG-CGAACCGC 142233
Query 153088 AGGAAGATGAAGACGCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGT 153147
|| |||| || || || ||| | || || || ||| || |||
Sbjct 142232 -----GACGAAG-CG--------GCGTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTG- 142188
Query 153148 GCTTTG-AAGCCCTGATGACTCGTATTGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCC 153206
|| | |||| |||||||| || |||| |||| ||| | |||||| | || ||
Sbjct 142187 GCGAAGAAAGCGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCG 142128
Query 153207 CCGATCCTTTATACAGAAGGTGCGTTTGGTGTACGGTTGAAACCCGATGATGA-AATTCT 153265
|| ||||| || | |||||||||| ||||| || ||||| | || || || | |||
Sbjct 142127 CCAATCCTGTACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCC 142068
Query 153266 GGAACTGTTCAAAAATGGGCGTAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 153325
|| | | ||||||||||| ||| || || || |||||||| || ||||||||||
Sbjct 142067 GGCA-TCTTCAAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAAAC 142009
Query 153326 TCTGA---TGCTTTTCGG-ATCTGGACAACACCCATTCGAC-CGGATCGGTTCTCAGAAC 153380
| | ||| ||||| | | ||| ||| |||||| | | | ||| |||
Sbjct 142008 CATTAACGCGCTGTTCGGCAACCAGAC-CCACGTGTTCGACGCCGGCCAGTTACGCGAAA 141950
Query 153381 ATGGGTAGACTGATTCTGGAATATCTACGCGCTGCGACCGAAGCATGGAAAAAGAAAACC 153440
| | || | |||| ||| ||| || || |||||| |||||| | ||||
Sbjct 141949 AAGCCGAGGC-GATTGTGGCTCGTCTGAAAGCGGCAACCGAAAGCTGGAAAGACGAAACG 141891
Query 153441 GGATTTGGGTTTAGTCTGTATTCAACCCCTGCTGAATCTCTATGTCATCGTTTCTGCAAA 153500
|| | || || || ||||| || || ||| || || | || |||||
Sbjct 141890 GGCTACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGCGACCGCTTCTGTCGT 141831
Query 153501 CTAGACTATGAGAAATTCGGAAGTATCAAAGGGATCACAGATAAAGGCTGGTACACTAAC 153560
|| || | | ||||||| | || | || |||||||| | ||||| |||
Sbjct 141830 CTGGATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAAGGTTACTACACCAAC 141771
Query 153561 AGTTTTCATCTGGACGTTGACCGTAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCC 153620
|| || ||||||||||| || ||||||| |||| ||| ||| |||||| |||||
Sbjct 141770 AGCTTCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAACTCGACTTCGAAGCG 141711
Query 153621 GATTAT-CATTACATTGCAACTGCTGGACATATCAGCTATGTAGAATTCCCTGATATGAA 153679
||| | || ||||| || || ||| |||||| |||| |||| | || |
Sbjct 141710 CCGTATCCGCCACTCAGCAACGGC-GGTTTCATCTGCTATGGCGAATACCCTAACCTGCA 141652
Query 153680 AAACAACCTGGAAGCCCTTGAAAAAGTCTGGGATTA 153715
| |||| ||| |||| || ||| | || ||||||||
Sbjct 141651 ACACAATCTGAAAGCGCTGGAAGACGTGTGGGATTA 141616
Score = 82.4 bits (90), Expect = 9e-11
Identities = 177/263 (67%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 152156 CAACGAAAACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCGGG 152215
|||||| || || |||||||| || ||||||| | || || || ||||||||
Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAGTGATCCCGACCCAGCGTGACCTGCTGGCGGG 143095
Query 152216 TATCGTTTCTAAACATATGGCGCGTAAC--CATATTCTACCGAAACATATTGTAGAGGCG 152273
||| || | || ||| ||| ||| |||||| ||||| || | || ||||
Sbjct 143094 TATTGTCGCCAAGCATTA--CGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCG 143037
Query 152274 CATGATTCCGGTGATATTCATTATCACGATCTGGATTACAGCCCGTTCACCCCATACACT 152333
||||| || || || |||||||| || || ||||| ||||||| ||| |
Sbjct 143036 CATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTT 142977
Query 152334 AACTGCTGTCTTGTTGACCTAAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCT 152393
|||||| || | ||||| ||||||||||| | |||| ||| |||||||| ||
Sbjct 142976 AACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCG 142917
Query 152394 GATATCGAACCGCCTAAATCAAT 152416
|| || || |||| || || ||
Sbjct 142916 GAAATTGACACGCCAAAGTCTAT 142894
>seq35
Length=455554
Score = 125 bits (138), Expect = 8e-24
Identities = 203/290 (70%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 39323 GACCAGATCGCAAAAGTCATTGAACAACTGAAATCAACCCCAGACGATCGCG--GGATCA 39380
|||||| | ||||| || ||||||| ||||| | ||| ||| ||||| | || |
Sbjct 112455 GACCAGCTGGCAAATGTGGTTGAACAGCTGAAGAAAGACCCTGAC--TCGCGTCGTATTA 112512
Query 39381 TCGTTTCGGCATGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTT 39440
|||| || ||||||||| | || || ||| | ||||| || || || ||| ||
Sbjct 112513 TCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCACGCTT 112572
Query 39441 TCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTG 39500
|||| |||||| ||| | |||||||| |||| ||| ||| ||||| ||| |
Sbjct 112573 TCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCATGCG 112632
Query 39501 ATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCG 39560
|| ||||| | || |||||||||||||||||| ||| || || ||| |||||| || |
Sbjct 112633 ATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATGATGG 112692
Query 39561 CTGATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGAT 39610
| | |||| |||||||| ||| | || ||||| ||||| |||
Sbjct 112693 CGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557513488356720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |