Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5 140 4e-28 >seq5 Length=447502 Score = 140 bits (154), Expect = 4e-28 Identities = 235/338 (70%), Gaps = 8/338 (2%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || || || ||| | || |||||| ||| ||||| |||||| |||||| || || Sbjct 14641 CCAGTAGCTATGACATAGTCTCCAGGTTTTTCCTGTTGCAGCATTGTCCACATCGCTTCC 14582 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 |||||||||||||||||||||||||| || | ||| || ||||| || | | | | Sbjct 14581 ACATAATCTCTGGCATGTCCCCAGTCGCGGCGGCTATCCAGGTTTCCAAGCTCCATAAAT 14522 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTTA---ATGCT-CTTGTAATCTTACGAGTTACAAA 47963 || ||| |||| || |||| | ||| | || || || || || || || Sbjct 14521 TCCAAAAGACC----GAGACTGATTTTCGCGACGCTACGGGTTATTTTGCGGGTCACGAA 14466 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCC 48023 | | || || |||||||| ||||| || || || || || ||| || | || | ||||| Sbjct 14465 ATTCTCTCCGCGTCTTGGGGATTCGTGGTTGAATAGGATGCCATTAGAAGCGAAGATTCC 14406 Query 48024 GTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGG 48083 ||| | || || ||||| | ||||||||||| || | | || || ||| | || || Sbjct 14405 GTAAGCCTCTCGGTAGTTTATGACTATCCAGTAAGCAAACATCTTGGCTACAGCGTAGGG 14346 Query 48084 AGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAG 48121 || | || ||||| || |||||||| |||| |||| Sbjct 14345 GGATCTCGGGTAGAATGGCGTGGTCTCGCTCTGCGGAG 14308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664921791980880