Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6691 109 7e-19 seq742 109 7e-19 >seq6691 Length=42033 Score = 109 bits (120), Expect = 7e-19 Identities = 339/513 (66%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068 |||| ||| | |||||||||| | ||||| || | ||| | | || | | | Sbjct 14432 TACCGTGTGTGAAGAAGAAGGCAGACTGGGCCCTGCAGTGGATCGGCAGCGACACGGCCA 14373 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA- 65127 |||||| ||||| | | || || || || || || || |||||||||||||| || Sbjct 14372 CCTTCGGGGAGCGTGTGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGG--CAG 14315 Query 65128 TTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || ||| | || | |||| |||||||||| || |||||||| ||| | |||| || Sbjct 14314 TTTTGCCTCCATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGCTTGACCTTCAGCAA 14255 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGC-TCTTCAAGA 65245 || | || |||||||| |||||||||||| || |||||| || | | ||||| | Sbjct 14254 CGAGTTGATCTCCCGAGACGAGGGTCTCCACTGCGACTTTGCC-TGCCTCATGTTCAA-A 14197 Query 65246 CTTTGCGTA-ATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 | | ||| | | ||||| ||| | ||| || ||||| || || || || Sbjct 14196 CACTTAGTACAGAAACCCAGCCCCGCACGAGTCCTAGCTATCGTCAAGGATGCTGTCATC 14137 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAG 65364 ||||| ||| ||| || ||||| || || | || | || ||||||| || Sbjct 14136 ATTGAACAAGAGTTTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCGAC 14077 Query 65365 AAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTGCC 65423 |||||| |||| ||||| | |||| | || || ||| | | | || ||||| Sbjct 14076 CTGATGTCGCAGTATATTGAATTTGTGGCCGACCGGCTCTTGGTGGACCTGGGCTGTGCC 14017 Query 65424 ACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAA 65483 | || | | | | ||||| || || ||| ||||| | || ||| || || || Sbjct 14016 AAGCACTACGGA-TCCAAGAACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAA 13958 Query 65484 GACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||| |||||| |||||||| || Sbjct 13957 GACCAACTTCTTCGAGAAGAAGGTTGGGGAATA 13925 >seq742 Length=196864 Score = 109 bits (120), Expect = 7e-19 Identities = 885/1410 (63%), Gaps = 41/1410 (3%) Strand=Plus/Plus Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 |||| || || ||||| ||||| |||| | |||| ||||||||||||||||||||| Sbjct 47156 GAAAGACCGCAACACATGCTCATGAGGGTATCTGTCGGTATCCACGGGGAAGACATTGAT 47215 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAAC 75324 || | | | || || ||| || |||| | | || |||| |||||| | || || Sbjct 47216 TCAGCCATTGAAACTTACAACCTTCTGTCAGA-GAAATACTTCACTCACGCCAGCCCTAC 47274 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 || ||| || | || || | || ||| |||| ||||||||| | |||| | Sbjct 47275 TCTATTCTCCGCAGCCACGCCCCGTCCTCAGCTGTCTTCTTGCTTCCTACTGGCCATGAG 47334 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 || || || | || ||||| | || || | | ||||||| | | || |||| Sbjct 47335 CGATGATAGTATTGAAGGGATCTACGACACCCTGAAGCAGTGTGCCCTGGTTTCCAAGTC 47394 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 75504 ||||| ||||| || | || | || | ||||||| || || ||| Sbjct 47395 TGCTGGAGGTATCGGCCTTCATGTACACTGCATCCGAGCCAAGGGTTCCTACATCGCGGG 47454 Query 75505 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564 || || || || |||| | | || ||||| || || | || ||| || || Sbjct 47455 TACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCGTGTGTACAATAACACGGCCCG 47514 Query 75565 CTATGTAAATCAAGCGGGGCGTCGCAAGGGGTCCA------TCGCGGTCTACTTGGAACC 75618 ||||||| | || ||| | |||| || || |||| | ||| | || || Sbjct 47515 CTATGTAGACCA---GGGAGGAAACAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGCC 47571 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||| || || || | || ||| | || || | || || | || || | Sbjct 47572 GTGGCACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAGT 47631 Query 75679 TCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 ||| || | | || | || | | ||||||| || || || ||||||||||| || | Sbjct 47632 TCG-TGCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCG 47690 Query 75738 AGG--AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-G 75794 || | | || | ||| ||| | || || || | || || || | ||| | Sbjct 47691 AGAGCAACGAGG--ATTGGAGTCTCATGTGCCCCCACGATGCTCCCGGCTTACACGAGTG 47748 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 | | ||| || || ||||| || || |||||| || |||| || ||| | | || Sbjct 47749 CTG-GGGAGAAGAATTTGAGGCTCTGTACACACGCTACGAAGCCGAAGGTCGTTCTAAGA 47807 Query 75855 CGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 || | | || ||| || || |||| ||| || || |||| || || || ||| Sbjct 47808 AGAAGAT-CAAGGCGCAGACTTTGTGGATGGCCATCATCGAATCTCAAGTAGAAACGGGA 47866 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 || || || ||||| |||||||| || || ||| ||||| |||||| | ||| ||||| Sbjct 47867 ACCCCCTACATGCTGTACAAGGACGCGTGCAACCGAAAGAGCAACCAACAAAATCTGGGA 47926 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || || ||| || || || ||||| ||||| | || ||||| || ||||| Sbjct 47927 ACTATTAAGTGCAGTAACCTCTGCACAGAAATAGTTGAATACACTTCCAAAGATGAAGTA 47986 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093 ||||| ||||||||||| || |||| || ||| ||||| || ||| | | Sbjct 47987 GCTGTCTGCAATTTGGCCTCTATCG--CTGTCAA--TATGT--TTGTAGATAATAAGGTA 48040 Query 76094 TTTGATTATGAAAAACTTCATGAA-ATC---ACAAAGATTGTTACCAAAAATCTAAACCG 76149 || || | |||||| | |||| ||| || |||| ||| || |||||| | ||| Sbjct 48041 TTCGACTTTGAAAAGC----TGAAGATCGTAACCAAGACTGTCACTAAAAATTTGAACAA 48096 Query 76150 AGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACA 76208 | | || ||| || ||||| || || ||| || ||| || || ||||| ||| Sbjct 48097 AATTATCGACGTTAACTTTTACCCTGTACCAGA-AGCTAGAACATCGAACATGCGTCACC 48155 Query 76209 GACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCAT 76268 | || || ||| | || | ||||| || || |||| ||| | || | | | | Sbjct 48156 GCCCCATCGGTATTGGAATACAAGGCCTGGCAGATGCTTTTGTCTTAATGAGATTGCCTT 48215 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 |||| || ||||| || ||||| | || ||||| || ||||| ||| Sbjct 48216 TTGAGAGTGAAAAAGCCCAGCTTCTGAATCAACAAATATTTGAGACATTGTATTACGGTG 48275 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | ||||| || ||||| || |||| || | ||| | || ||||| | || | Sbjct 48276 CTCTGGAAGCAAGTTGCGAGCTGGCCGAGAAGGAGGGTACATACGAGACGTACCCAGGAT 48335 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACT 76448 ||| | | ||||| | ||||| | ||| ||||||| | ||| || | | | | Sbjct 48336 GTCCTGTCAGCAAAGGGATTCTTCAATATGAGATGTGGG-ACAAGAAGCCTA-CAGATTT 48393 Query 76449 ACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506 | |||||| || | || | ||| | | || | | ||| || | Sbjct 48394 GTGGAACTGGGCTGCCTTGAAAGCTAAGATCGCGATACACGGAGTCAGGAACTCGCTGCT 48453 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566 | ||||| ||||| || ||||||||||| || || || || || || |||| |||||| Sbjct 48454 TCTCGCACCCATGCCTACCGCCTCCACCGCCCAGATTTTAGGAAACAACGAATCCTTTGA 48513 Query 76567 ACCATACACAACAAACATCTACCTGAGAAG 76596 ||| | ||| | ||||||||| ||||| Sbjct 48514 ACCCTTCACTTCCAACATCTACACCAGAAG 48543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596056296601920