Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq8056 118 2e-21 seq15643 102 1e-16 seq48539 93.3 8e-14 >seq8056 Length=34938 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| || || ||||| | ||| | |||| ||||| ||| || || || Sbjct 32360 ATACCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCG 32301 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || |||| || || ||||| ||||| || ||||| || || || Sbjct 32300 GAGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGG 32241 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| || || || ||||||||||| | ||| Sbjct 32240 GGGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCG 32181 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || ||||||||||| || | ||| |||||||| Sbjct 32180 ACCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| || || | || ||||| | || | ||| || ||||| ||||| Sbjct 32132 ATGCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCG 32073 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || |||||||| ||||| || || | | ||||| || || Sbjct 32072 GAAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGA 32013 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| |||||||| || |||||||| | || Sbjct 32012 GGAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCA 31953 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || || || || ||||| | ||| |||||||| Sbjct 31952 ACCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 >seq15643 Length=27379 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||| ||||| | ||||| || | || | ||| || ||||| |||||||| Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGA 12215 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | ||| | || || | ||||| || || || || || ||||| || || || || Sbjct 12214 AAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| ||||| || || ||| ||||| ||||| || || | ||||| Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || |||||||| || || | || || | ||| ||||||||| Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATT 12046 >seq48539 Length=7100 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| ||||||||||| || || ||||| || || || || || ||||| || Sbjct 7097 TCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTG 7038 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || ||| ||||| || |||||||| | || || || || || ||| Sbjct 7037 TCTTGGATCTTGGCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGTGTTATG 6978 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||||||| | || || | ||| || |||||| Sbjct 6977 GTTTTACCAGTCAGAGTCTTGACGAAGATTTGCATT 6942 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || || || | |||| ||||| ||||| || || Sbjct 6716 ATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCG 6657 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || ||||| || || || || || || || ||||| || || || Sbjct 6656 GAAAGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGA 6597 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| ||||| || || || || | || Sbjct 6596 GGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCA 6537 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||||||||| || || || || | || || | ||| |||||||| Sbjct 6536 ACTTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904357198357200