Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq35 416 1e-111 >seq35 Length=455554 Score = 416 bits (460), Expect = 1e-111 Identities = 665/945 (70%), Gaps = 16/945 (2%) Strand=Plus/Minus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 ||||||||||||||| || ||||| || || || || || |||||||| |||| Sbjct 13182 GCCATCAACTGGAACAAAATCCAGGACGATAAAGACCTCGAAGTGTGGAACCGCCTGACG 13123 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 || ||||||||||| || ||| | || | || ||||| || ||| | |||| ||| Sbjct 13122 TCGAATTTCTGGCTGCCGGAAAAGGTGCCGTTGTCGAACGATATTCCGTCGTGGGCGACG 13063 Query 59386 CTGA---CGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTC 59442 || | || ||||| | ||| || ||||| || || || |||||||||||| |||| Sbjct 13062 CTCAGCGCGCAGGAAAAACAA---CTGACGATCCGCGTATTTACCGGCCTGACGCTGCTG 13006 Query 59443 GACACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCAC 59502 || || | || | || || || || ||||| || ||| | ||||| ||| Sbjct 13005 GATACCGTGCAAAACGTGGTCGGCGCACCGACGCTGATGAAAGATGCGGTGACGCCACAC 12946 Query 59503 GAGGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGC 59562 || || ||||| ||| |||| ||| || ||||| ||||||| ||| || || Sbjct 12945 GAAGAAGCGGTTTACTCGAATATCTGCTTTATGGAAGCGGTGCATGCGCGTTCTTATAGT 12886 Query 59563 AACATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAG 59622 || ||||||||||||||| | || ||| | || | || | ||||||| ||| Sbjct 12885 TCAATTTTCTCGACGCTGTGCGCCACCGTGGACGTGGATGAAGCCTACCGCTGGAGCGAG 12826 Query 59623 GAGAA--TC-CGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGAC 59679 || || || || |||||| || || |||| | || || ||| | || || Sbjct 12825 GAAAACGTCGCG---CTGCAAAATAAAGCGGCGATCATTTTGTCGTATTACGACGGCGAA 12769 Query 59680 GATCCGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGC 59739 |||||||||| | ||| || ||| ||| || ||| ||||||||||||||| || Sbjct 12768 GATCCGCTGATGAAGAAAGTCGCCAGCGTGTTCCTTGAGTCGTTCCTGTTCTACTCCGGT 12709 Query 59740 TTCTACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATC 59799 || || ||||||||||||||||| || || | ||||| || ||||| || || ||||| Sbjct 12708 TTTTATCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTCACCAACACCGCGGATCTGATC 12649 Query 59800 CGGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGC 59859 || || ||||| |||||||| ||||| ||||| ||||||||||| || || |||||| Sbjct 12648 CGTCTGATCATCCGTGACGAAGCGGTTCACGGTTACTACATCGGCTATAAATTCCAGAAA 12589 Query 59860 GGCCTGGAGACT-CAGAACGAGGCTCG-CCGCGAGGAGCTGAAGGACTACACGTACGGTC 59917 | |||| ||| | | ||| | || | ||| || | ||||| | ||| | || Sbjct 12588 GCGCTGG-CACTGGAAAGCGAAGAGCGTCAGCG-TCAGATCAAGGAGCAGGCGTTTGATC 12531 Query 59918 TGCTACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGG 59977 || | | || ||||||||||||||||| ||||| | || ||||| ||||| || | Sbjct 12530 TGATTCAGGATTTGTACGACAACGAGATCCGCTACACCGAAGAACTGTATGACGGTGTAG 12471 Query 59978 GACTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATC 60037 | || || || || |||| ||||||| |||||||||||||| ||||||||||||| Sbjct 12470 GCTGGAGCGAAGACGTGAAGAAATTCCTGCATTACAACGCCAACAAAGCGCTGATGAATC 12411 Query 60038 TCGGCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGG 60097 |||||||||| || |||||||| | | | || |||||| |||||||| | | | Sbjct 12410 TCGGCTACGAAGCCCTGTTCCCAGCCAGCATGGCGGATGTGAATCCGGCGATCCTCTCCG 12351 Query 60098 CACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATG 60157 || | || || || ||||| ||||||||||||||||| || || || | |||||| Sbjct 12350 CATTATCGCCAAACGCCGACGAAAACCACGACTTCTTCTCCGGATCCGGATCCTCGTATG 12291 Query 60158 TGATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 |||| ||||| || | ||| ||||||||||| ||||| |||| Sbjct 12290 TGATCGGCAAAGCCGTCAATACCGAAGACGAGGACTGGGATTTCT 12246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258713978894184