Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq19884 123 7e-23
seq223 96.9 1e-14
seq25120 84.2 6e-11
>seq19884
Length=15220
Score = 123 bits (136), Expect = 7e-23
Identities = 205/293 (70%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| |||||| | ||| ||||||||||| |||||| | ||||| ||||| |||
Sbjct 8645 TCCATAGCCTTGATAAGACGCCGCTGAATATATCCAGTTTCGGCAGTTTTGACAGCAGTA 8704
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
||||| ||||| | || || ||||| || |||||| | | || ||| |||||
Sbjct 8705 TCAATGAGACCTTCTCGTCCTCCCATGGCGTGGAAGTAGAATTCAGATGGTGTCAGCCCG 8764
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751
||| | | || | || |||||||| | | ||| || || |||| || |||| |
Sbjct 8765 GCAAGATATGAATTTTCTACGAAACCCCTGGACTCAGGACCGTAATCATC---CTTGATG 8821
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
||||| || || || || ||| | || | || |||||||| || |||||||||||
Sbjct 8822 AAGTGGGGGAGAGTTCTCTTCCTGAACCCAAAGGGAATACGCTTACCCTCAACGTTCTGT 8881
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
||||||| || | ||| | ||| || || || | || | |||||||| ||
Sbjct 8882 TGTCCCACACAAGCAATAACCTGGGAGATGTTAATATTAGATCCCTTGGATCC 8934
>seq223
Length=511576
Score = 96.9 bits (106), Expect = 1e-14
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 106903 TTTCATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTC 106962
|||||| ||| | |||||||| |||||||||| | |||| |||| |||| ||| ||
Sbjct 40002 TTTCATCGCAGATTCTGAACTCATGCCATAGAAAAGCATGAATTTTTCGCCATTTTCTTC 40061
Query 106963 AATTAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATC 107022
|| | ||||| | ||| || || | || | | |||||||| ||| ||||||||
Sbjct 40062 AACGACTGTACCTTCACATTCGTCATGCGCAGCCAGCATACCGCCAAGCATGACGAAATC 40121
Query 107023 AGCCCCGCCACCGAATGCTTTAGCCATATCACCAGG 107058
||| ||||| ||||| ||||| || | ||| |||||
Sbjct 40122 AGCACCGCCGCCGAAGGCTTTCGCTACATCGCCAGG 40157
>seq25120
Length=17501
Score = 84.2 bits (92), Expect = 6e-11
Identities = 163/235 (69%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869
||||||||||| || || ||| ||| | ||||||||||| || || || |
Sbjct 4937 ACACTTTGCCTTGAATACATTCAATCAAATGGCCAATAGTCATACGGGATGGGATGGCGT 4878
Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAG-TGAAGGGCATATCCTTTTCC 251928
| ||||| || |||||||| || | || || || |||| ||||||||||||| ||||
Sbjct 4877 GTGGATTAATTATGATGTCAGGAGTAAGACCTTC-GCAGCTGAAGGGCATATC---TTCC 4822
Query 251929 T--CAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCA 251985
| | || ||| | || ||||||||||||||| || |||||| ||||| || ||
Sbjct 4821 TGGCGGTATTGTATACCGCAAGTTCCCTTTTGTCCATGTCGAGAAGCAAACTTGTCTCCT 4762
Query 251986 ATAACAGGACGGCGAACACTACGAAGGCGAACCTTACAGAAGTTGTAACCATCAC 252040
|| |||| ||| ||| | | | | |||||| || ||||| || ||||
Sbjct 4761 ATTTGAGGAATGCGCACAGATCTCACTCTTATCTTACAAAACTTGTATCCTTCAC 4707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470519551625058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |