Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19884 123 7e-23 seq223 96.9 1e-14 seq25120 84.2 6e-11 >seq19884 Length=15220 Score = 123 bits (136), Expect = 7e-23 Identities = 205/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||| ||||||||||| |||||| | ||||| ||||| ||| Sbjct 8645 TCCATAGCCTTGATAAGACGCCGCTGAATATATCCAGTTTCGGCAGTTTTGACAGCAGTA 8704 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| | || || ||||| || |||||| | | || ||| ||||| Sbjct 8705 TCAATGAGACCTTCTCGTCCTCCCATGGCGTGGAAGTAGAATTCAGATGGTGTCAGCCCG 8764 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || | || |||||||| | | ||| || || |||| || |||| | Sbjct 8765 GCAAGATATGAATTTTCTACGAAACCCCTGGACTCAGGACCGTAATCATC---CTTGATG 8821 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| || || || || ||| | || | || |||||||| || ||||||||||| Sbjct 8822 AAGTGGGGGAGAGTTCTCTTCCTGAACCCAAAGGGAATACGCTTACCCTCAACGTTCTGT 8881 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||||| || | ||| | ||| || || || | || | |||||||| || Sbjct 8882 TGTCCCACACAAGCAATAACCTGGGAGATGTTAATATTAGATCCCTTGGATCC 8934 >seq223 Length=511576 Score = 96.9 bits (106), Expect = 1e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 106903 TTTCATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTC 106962 |||||| ||| | |||||||| |||||||||| | |||| |||| |||| ||| || Sbjct 40002 TTTCATCGCAGATTCTGAACTCATGCCATAGAAAAGCATGAATTTTTCGCCATTTTCTTC 40061 Query 106963 AATTAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATC 107022 || | ||||| | ||| || || | || | | |||||||| ||| |||||||| Sbjct 40062 AACGACTGTACCTTCACATTCGTCATGCGCAGCCAGCATACCGCCAAGCATGACGAAATC 40121 Query 107023 AGCCCCGCCACCGAATGCTTTAGCCATATCACCAGG 107058 ||| ||||| ||||| ||||| || | ||| ||||| Sbjct 40122 AGCACCGCCGCCGAAGGCTTTCGCTACATCGCCAGG 40157 >seq25120 Length=17501 Score = 84.2 bits (92), Expect = 6e-11 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 ||||||||||| || || ||| ||| | ||||||||||| || || || | Sbjct 4937 ACACTTTGCCTTGAATACATTCAATCAAATGGCCAATAGTCATACGGGATGGGATGGCGT 4878 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAG-TGAAGGGCATATCCTTTTCC 251928 | ||||| || |||||||| || | || || || |||| ||||||||||||| |||| Sbjct 4877 GTGGATTAATTATGATGTCAGGAGTAAGACCTTC-GCAGCTGAAGGGCATATC---TTCC 4822 Query 251929 T--CAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCA 251985 | | || ||| | || ||||||||||||||| || |||||| ||||| || || Sbjct 4821 TGGCGGTATTGTATACCGCAAGTTCCCTTTTGTCCATGTCGAGAAGCAAACTTGTCTCCT 4762 Query 251986 ATAACAGGACGGCGAACACTACGAAGGCGAACCTTACAGAAGTTGTAACCATCAC 252040 || |||| ||| ||| | | | | |||||| || ||||| || |||| Sbjct 4761 ATTTGAGGAATGCGCACAGATCTCACTCTTATCTTACAAAACTTGTATCCTTCAC 4707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470519551625058